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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGTGACATGGTTGCTGCAGCAAAGATTATGAATGCGACTCTTGTTCTTCCTCTACTCGACCATGAATCTTTCTGGACTGACCCGAGgttttatctcatttactctataacgagatattatccaagaaaagaagtggaatttgaagagatattctttgtgatttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G37980.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G37980.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv08s0007g01650.t01 (Vitis vinifera), 5'ss of exon 4
ATATGTGACATGGTTGCTGCAGCAAAGATTATGAATGCGACTCTTGTTCTTCCTCTACTCGACCATGAATCTTTCTGGACTGACCCGAGgtttt-------atctcatttactctataacgagatattatccaagaaaagaagtggaatttgaagagatattctttgtgat----ttgcag
|||||||| ||||||||||  || |||||||||||||| |||||||||||||||   || || ||||| || || ||||| |||| ||||| ||       |  | ||| | |||      |||| | ||   |     ||  | |  ||| |  | |  | | |  || |    ||||||
ATATGTGATATGGTTGCTGTTGCCAAGATTATGAATGCCACTCTTGTTCTTCCTTCTCTTGATCATGAGTCCTTTTGGACAGACCTGAGgtattgaatttgagtttattaattcttgttttagat-taatttgaattctgatcttgcttttaactataattacatcctggtatttttgcag