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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAACAAACATTAATCACCCTCTCAATAGTATTGGCAATGCTAACATTCTGgtgagactactctttctctgttttcttgaacacagagatgagtttcacggcaaatgttcacagtctttatgcaatttgtag

Basic information

species Arabidopsis thaliana
transcript AT2G37660.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G37660.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv08s0007g00530.t01 (Vitis vinifera), 5'ss of exon 4
CTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAACAAACATTAATCACCCTCTCAATAGTATTGGCAATGCTAACATTCTGgtgagactactctttctctgttttcttgaacacagagatgagtttcacggcaaatgttcacagtctttatgcaatttgtag--------------------
| ||  |||||||||| ||||| ||||| ||||||||||| |||||||||||| || | || || ||  | || ||  | || ||||  || || |||||  |   | ||||| |   |||| || |  | |    | | | ||      ||| |        | | ||  |     ||                    
CAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAACAGACCTAAACCATCCCTTGAACAGCTTGGGAAATGGGAATATCCTGgtttg-tgattcttttttatttttgttcagaaaattacttactctctttaacaatttgggtgtcatgtttgtgaaaatgagttctcatttttatgaatgct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076409|gb|DR372166.1|DR372166
EST:     GAACAAACATTAATCACCCTCTCAATAGTATTGGCAATGCTAACATTCTG                         GTCTGGAAGAGAAAGGCTGAGCAATACTTGGCTGATTCCGGTATTCCATAC
genomic: GAACAAACATTAATCACCCTCTCAATAGTATTGGCAATGCTAACATTCTGgtgagactac ... caatttgtagGTCTGGAAGAGAAAGGCTGAGCAATACTTGGCTGATTCCGGTATTCCATAC
EST: gi|125081331|gb|EL142595.1|EL142595
EST:     TAGTATTGGCAATGCTAACATTCTG                         GTCTGGAAGAGAAAGGCTGAGCAATACTTGGCTGATTCCGGTATTCCATAC
genomic: TAGTATTGGCAATGCTAACATTCTGgtgagactac ... caatttgtagGTCTGGAAGAGAAAGGCTGAGCAATACTTGGCTGATTCCGGTATTCCATAC
EST: gi|47831378|gb|CK121062.1|CK121062
EST:     GAACAAACATTAATCACCCTCTCAATAGTATTGGCAATGCTAACATTCTG                         GTCTGGAAGAGAAAGGCTGAGCAATACTTGGCTGATTCCGGTATTCCATAC
genomic: GAACAAACATTAATCACCCTCTCAATAGTATTGGCAATGCTAACATTCTGgtgagactac ... caatttgtagGTCTGGAAGAGAAAGGCTGAGCAATACTTGGCTGATTCCGGTATTCCATAC
EST: gi|124973098|gb|EL046753.1|EL046753
EST:     CAAACATTAATCACCCTCTCAATAGTATTGGCAATGCTAACATTCTG                         GTCTGGAAGAGAAAGGCTGAGCAACACTTGGCTGATTCCGGTATTCCATAC
genomic: CAAACATTAATCACCCTCTCAATAGTATTGGCAATGCTAACATTCTGgtgagactac ... caatttgtagGTCTGGAAGAGAAAGGCTGAGCAATACTTGGCTGATTCCGGTATTCCATAC
EST: gi|164005749|gb|ES205891.1|ES205891
EST:     TTAATCACCCTCTCAATAGTATTGGCAATGCTAACATTCTG                         GTCTGGAAGAGAAAGGCTGAGCAATACTTGGCTGATTCCGGTATTCCATAC
genomic: TTAATCACCCTCTCAATAGTATTGGCAATGCTAACATTCTGgtgagactac ... caatttgtagGTCTGGAAGAGAAAGGCTGAGCAATACTTGGCTGATTCCGGTATTCCATAC
EST: gi|164096960|gb|ES159675.1|ES159675
EST:     GAACAAACATTAATCACCCTCTCAATAGTATTGGCAATGCTAACATTCTG                         GTCTGGAAGAGAAAGGCTGAGCAATACTTGGCTGATTCCGGTATTCCATA
genomic: GAACAAACATTAATCACCCTCTCAATAGTATTGGCAATGCTAACATTCTGgtgagactac ... caatttgtagGTCTGGAAGAGAAAGGCTGAGCAATACTTGGCTGATTCCGGTATTCCATA
EST: gi|125108071|gb|EL161141.1|EL161141
EST:     ATTGGCAATGCTAACATTCTG                         GTCTGGAAGAGAAAGGCTGAGCAATACTTGGCTGATTCCGGTATTCCATAC
genomic: ATTGGCAATGCTAACATTCTGgtgagactac ... caatttgtagGTCTGGAAGAGAAAGGCTGAGCAATACTTGGCTGATTCCGGTATTCCATAC
EST: gi|124937599|gb|EL014339.1|EL014339
EST:     CTAACATTCTG                         GTCTGGAAGAGAAAGGCTGAGCAATACTTGGCTGATTCCGGTATTCCATAC
genomic: CTAACATTCTGgtgagactac ... caatttgtagGTCTGGAAGAGAAAGGCTGAGCAATACTTGGCTGATTCCGGTATTCCATAC