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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTGATGGATGCATCTGGTGTTGCTCTTGTTCTGATCGGACCGGGAAGCATCGATCAGgtaaacaacattttgaatacgcaatttttgtaagcgtaagcagttttaagctgctgcttctcacgttatgaccatctatgtatgcag

Basic information

species Arabidopsis thaliana
transcript AT2G37240.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G37240.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA03G33400.1 (Glycine max), 5'ss of exon 3
GATGTGATGGATGCATCTGGTGTTGCTCTTGTTCTGATCGGACCGGGAAGCATCGATCAGgtaaacaacattttgaatacgc-aatttttg--taagcgtaagcagttttaagctgc-tgcttctcacgttatgaccatctatgtatgcag---------
||| | ||||||||||||||||| || |||||  |||| ||||| || ||||| ||||||||| |    | ||  |||      || | |   |     | ||   | ||| | ||  |  ||      || |   ||| | || |||  |         
GATATAATGGATGCATCTGGTGTGGCACTTGTATTGATTGGACCTGGGAGCATTGATCAGgtatatctgacttataatgtattgatctgtacttttagatcagacctgttaggttggattttttatttttttttttcatttttggatgttgtatattctt

upper sequence: AT2G37240.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA19G36130.1 (Glycine max), 5'ss of exon 4
GATGTGATGGATGCATCTGGTGTTGCTCTTGTTCTGATCGGACCGGGAAGCATCGATCAGgtaaacaacattttgaatacgcaatttttgtaagcgtaagcagttttaagctgctgcttctcacgttatgaccatctatgtatgcag----------------
||| | ||||||||||||||||| || |||||  |||| ||||| || ||||| ||||||||| |  | |    ||| |     |   ||   |       || |     ||| |   |   |  | |    ||| | || |||  |                
GATATAATGGATGCATCTGGTGTGGCACTTGTATTGATTGGACCTGGGAGCATTGATCAGgtatatcagaa---gaaaatatggtgaatgcctgtacttttagatcaggtctgttaggttggatttcactttcatttttggatgtcgtatattcttgtactgc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116467378|gb|EG509970.1|EG509970
EST:     ATGCATCTGGTGTTGCTCTTGTTCTGATCGGACCGGGAAGCATCGATCAG                         GCTAATACTTTTGTGGAACAGACTAAGTTTAAAGGAG
genomic: ATGCATCTGGTGTTGCTCTTGTTCTGATCGGACCGGGAAGCATCGATCAGgtaaacaaca ... atgtatgcagGCTAATACTTTTGTGGAACAGACTAAGTTTAAAGGAG
EST: gi|116467371|gb|EG509963.1|EG509963
EST:     ATGCATCTGGTGTTGCTCTTGTTCTGATCGGACCGGGAAGCATCGATCAG                         GCTAATACTTTTGTGGAACAGACTAAGTTTAAAGGAG
genomic: ATGCATCTGGTGTTGCTCTTGTTCTGATCGGACCGGGAAGCATCGATCAGgtaaacaaca ... atgtatgcagGCTAATACTTTTGTGGAACAGACTAAGTTTAAAGGAG
EST: gi|124974394|gb|EL047956.1|EL047956
EST:     CGGACCGGGAAGCATCGATCAG                         GCTAATACTTTTGTGGAACAGACTAAGTTTAAAGGAG
genomic: CGGACCGGGAAGCATCGATCAGgtaaacaaca ... atgtatgcagGCTAATACTTTTGTGGAACAGACTAAGTTTAAAGGAG