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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGCTAAGCTCAGCTCACACCCTCATTCATATCACTTGTCAAGATCACAAAGGTCTTCTCTATGATATTATGAGGACCTTCAAGGATTTCAACATTCAGgtttgtgcaagtctttaatgggttttttctgacccttcaaattcatatgctttgcttaaaccttgcgactgttatttacatgagactcgttttctcaaatcttatttgatgatcag

Basic information

species Arabidopsis thaliana
transcript AT2G36840.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G36840.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA19G36910.1 (Glycine max), 5'ss of exon 4
CTCGCTAAGCTCAGCTCACACCCTCATTCATATCACTTGTCAAGATCACAAAGGTCTTCTCTATGATATTATGAGGACCTTCAAGGATTTCAACATTCAGgtttgtgcaagtctttaatgggttttttctgacccttcaaattcatatgctttgcttaaaccttgcgactgttatttacatgagactcgttttctcaaatcttatttgatgatcag
 || || ||  | |||||||| ||  | || || |  ||||||||||||||||||||||| ||||| || ||||| ||  | ||||| | ||| |||||||| |     |||  || | | | |       |  || |||     |||  |||  | |  | ||   |||| |||  |   || | | ||| ||   |     | ||||| | |  
TTCACTGAGTCCTGCTCACACGCTTGTCCAAATTATATGTCAAGATCACAAAGGTCTTCTTTATGACATCATGAGAACTCTGAAGGACTACAATATTCAGgtat-----agtaattcaagagctg-----aatactacaa-----tattttttaatcatgcttttaaactgctatgaattggatagt-gttgtcagcagaaagaattgataagcct

upper sequence: AT2G36840.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA03G34210.1 (Glycine max), 5'ss of exon 4
CTCGCTAAGCTCAGCTCACACCCTCATTCATATCACTTGTCAAGATCACAAAGGTCTTCTCTATGATATTATGAGGACCTTCAAGGATTTCAACATTCAGgtttgtgcaagtctttaatgggttttttctgacccttcaaattcatatgctt----tgcttaaaccttgcgactgttatttacatgagactcgttttctcaaatcttatttgatgatcag
 ||||| ||  | |||||||| ||  | || || |  ||||||||||||||||||||||| ||||| || ||||| ||  | ||||| | ||| |||||||| |  | || ||   |   |  |  | |  |   || | | ||||    ||    ||||   || | |  | |||| |   ||  |     |  ||   || | |              
TTCGCTGAGTCCTGCTCACACGCTTGTCCAAATTATATGTCAAGATCACAAAGGTCTTCTTTATGACATCATGAGAACTCTGAAGGACTACAATATTCAGgtata-gtaattcaagacctgaatagtac-aatattttataatcatgcttttgaactgctatgacttggatagtgttgtcagcagaaa----gaattgataagtgt--------------