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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGGTGGAGTAGCCAGGGCCCGCGCTTTTGCAAAGAAATTATCAGATGCACCACTTGCCATTGTCGATAAAAGGCGTTCTGGACACAATGTTGCTGAGgtatccctttctttcagagtcagagtttgctcaccaacaccgcttgcttccccttaagttcacatttgttatactttcctttcag

Basic information

species Arabidopsis thaliana
transcript AT2G35390.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G35390.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os02g03540.1 (Oryza sativa), 5'ss of exon 5
TGTTGGTGGAGTAGCCAGGGCCCGCGCTTTTGCAAAGAAATTATCAGATGCACCACTTGCCATTGTCGATAAAAGGCGTTCTGGACACAATGTTGCTGAGgta---------tccctttctttcagagtcagagtttgctcaccaacaccgcttgcttccccttaagttcac---atttgttatactttcctttcag----
|||||| || || |||||||| || |||||||| || ||  ||||||||||||| || || ||||| ||||||||  |   ||||||||||||||| |||| |         | | || ||||| |  | | |    | | | ||     |  |||        ||  | ||    || ||| ||  ||| | | |     
TGTTGGAGGTGTTGCCAGGGCACGTGCTTTTGCCAAAAAGCTATCAGATGCACCTCTAGCAATTGTTGATAAAAGAAGGCATGGACACAATGTTGCCGAGgcaagtagagcattctttgctttctggtttata-caggataaacatttatgaatgcaagtaggaaaaataacttagttcgttctaagttcttctgatcttc

upper sequence: AT2G35390.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA05G06110.1 (Glycine max), 5'ss of exon 5
TGTTGGTGGAGTAGCCAGGGCCCGCGCTTTTGCAAAGAAATTATCAGATGCACCACTTGCCATTGTCGATAAAAGGCGTTCTGGACACAATGTTGCTGAGgtatccctttctttcaga-------gtcagagtttgctcaccaacaccgcttgcttccccttaagttcacatttgt----tatactttcctttcag----
||||||||| || || || || || |||||||||||||||||||| ||||||||  | || ||||| || ||||||||   ||||||||||||||||||||||     |      | |        | |   ||  |   |     | || |  |||  ||  | ||   || | |     | | | | |||| |     
TGTTGGTGGTGTCGCAAGAGCTCGTGCTTTTGCAAAGAAATTATCTGATGCACCCTTAGCTATTGTAGACAAAAGGCGCCATGGACACAATGTTGCTGAGgtaatagctggaacaaaacatgtgcattatccttgacatgctgctgcagcatttttcttctggaattgctatctatgtaacagagtgtactttaaacaga

upper sequence: AT2G35390.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA17G16400.3 (Glycine max), 5'ss of exon 5
TGTTGGTGGAGTAGCCAGGGCCCGCGCTTTTGCAAAGAAATTATCAGATGCACCACTTGCCATTGTCGATAAAAGGCGTTCTGGACACAATGTTGCTGAGgtatccctttctttcagagtcagagtttgctcaccaacaccgcttgcttccccttaagttcacatttgttatactttcctttcag---------------
||||||||| || || || || || |||||||||||||||||||| ||||||||  | || ||||| || || |||||   ||||||||||||||||||||||       |    | |     | | |   |   ||   |     ||| |  ||   ||||  | | | | |   | |||| |                
TGTTGGTGGTGTTGCAAGAGCACGTGCTTTTGCAAAGAAATTATCTGATGCACCTTTAGCTATTGTAGACAAGAGGCGCCATGGACACAATGTTGCTGAGgtaataacggcaacaaaatctgcattgtatccttgaaatgccaaatctttctttttttttcatttatttaacagagtacttttaaacagattttattggg

upper sequence: AT2G35390.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv02s0012g00530.t01 (Vitis vinifera), 5'ss of exon 5
TGTTGGTGGAGTAGCCAGGGCCCGCGCTTTTGCAAAGAAATTATCAGATGCACCACTTGCCATTGTCGATAAAAGGCGTTCTGGACACAATGTTGCTGAGgtatccctttctttcagagtcagagt------ttgctcaccaac--accgcttgcttccccttaagtt-cacatttgttatactttcctttcag------
|||||| ||||| || || || || |||||||||||||| || || ||||| ||  | ||||| || ||||||||||||   ||||| |||||||||||||||       |    | | ||||  |      |   |  |||||  ||   |||  |  ||||   |  || |||  ||||| |||  ||          
TGTTGGAGGAGTTGCAAGAGCACGTGCTTTTGCAAAGAAGTTGTCTGATGCGCCTTTAGCCATAGTGGATAAAAGGCGTCAAGGACATAATGTTGCTGAGgtaatttccacaccaaaactcagcctacattatctttttccaacttactcattggattgccttggttaacatattcattataatttttttcttttgtctt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124962652|gb|EL037040.1|EL037040
EST:     TGTCGATAAAAGGCGTTCTGGACACAATGTTGCTGAG                         GTCATGAACCTAATTGGTGATGTAAGAGGGAAGGTGGCAATAATGGTGGAT
genomic: TGTCGATAAAAGGCGTTCTGGACACAATGTTGCTGAGgtatcccttt ... ttcctttcagGTCATGAACCTAATTGGTGATGTAAGAGGGAAGGTGGCAATAATGGTGGAT