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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTTTAAACTCCCACCGTCAGCAAGCCGGTGGAAGAGGAAGTTATACTACTTTCTGCGTAACAAGTTGAAGCTGCCAGgtgagaactctttaatctttgatatgtgcatcatctgcaatgtccaagaacttatgaaacaaatagtttattgatctgtggttgtgtgatgatcttctag

Basic information

species Arabidopsis thaliana
transcript AT2G35360.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116394649|gb|EG437241.1|EG437241
EST:     GTGGAAGAGGAAGTTATACTACTTTCTGCGTAACAAGTTGAAGCTGCCAG                         ATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
genomic: GTGGAAGAGGAAGTTATACTACTTTCTGCGTAACAAGTTGAAGCTGCCAGgtgagaactc ... gatcttctagATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
EST: gi|116394635|gb|EG437227.1|EG437227
EST:     GTGGAAGAGGAAGTTATACTACTTTCTGCGTAACAAGTTGAAGCTGCCAG                         ATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
genomic: GTGGAAGAGGAAGTTATACTACTTTCTGCGTAACAAGTTGAAGCTGCCAGgtgagaactc ... gatcttctagATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
EST: gi|116394647|gb|EG437239.1|EG437239
EST:     CGTAACAAGTTGAAGCTGCCAG                         ATATCATTCTTATGGGACCTTTCTCTTTTTGTCTAAAGATGTGGGTTATTA
genomic: CGTAACAAGTTGAAGCTGCCAGgtgagaactc ... gatcttctagATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
EST: gi|116394640|gb|EG437232.1|EG437232
EST:     GTGGAAGAGGAAGTTATACTACTTTCTGCGTAACAAGTTGAAGCTGCCAG                         ATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
genomic: GTGGAAGAGGAAGTTATACTACTTTCTGCGTAACAAGTTGAAGCTGCCAGgtgagaactc ... gatcttctagATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
EST: gi|116394655|gb|EG437247.1|EG437247
EST:     GTGGAAGAGGAAGTTATACTACTTTCTGCGTAACAAGTTGAAGCTGCCAG                         ATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
genomic: GTGGAAGAGGAAGTTATACTACTTTCTGCGTAACAAGTTGAAGCTGCCAGgtgagaactc ... gatcttctagATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
EST: gi|116394641|gb|EG437233.1|EG437233
EST:     GTGGAAGAGGAAGTTATACTACTTTCTGCGTAACAAGTTGAAGCTGCCAG                         ATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
genomic: GTGGAAGAGGAAGTTATACTACTTTCTGCGTAACAAGTTGAAGCTGCCAGgtgagaactc ... gatcttctagATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
EST: gi|164046461|gb|ES080841.1|ES080841
EST:     AGTTGAAGCTGCCAG                         ATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
genomic: AGTTGAAGCTGCCAGgtgagaactc ... gatcttctagATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
EST: gi|116394653|gb|EG437245.1|EG437245
EST:     CGTAACAAGTTGAAGCTGCCAG                         ATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
genomic: CGTAACAAGTTGAAGCTGCCAGgtgagaactc ... gatcttctagATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
EST: gi|116394642|gb|EG437234.1|EG437234
EST:     TGGGAAGAGGAAGTTATACTACTTTCTGCGTAACAAGTTGAAGCTGCCAG                         ATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
genomic: T-GGAAGAGGAAGTTATACTACTTTCTGCGTAACAAGTTGAAGCTGCCAGgtgagaactc ... gatcttctagATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
EST: gi|116394656|gb|EG437248.1|EG437248
EST:     TATACTACTTTCTGCGTAACAAGTTGAAGCTGCCAG                         ATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
genomic: TATACTACTTTCTGCGTAACAAGTTGAAGCTGCCAGgtgagaactc ... gatcttctagATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
EST: gi|116394643|gb|EG437235.1|EG437235
EST:     GTGGAAGAGGAAGTTATACTACTTTCTGCGTAACAAGTTGAAGCTGCCAG                         ATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
genomic: GTGGAAGAGGAAGTTATACTACTTTCTGCGTAACAAGTTGAAGCTGCCAGgtgagaactc ... gatcttctagATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
EST: gi|116394651|gb|EG437243.1|EG437243
EST:     TGGAAGAGGAAGTTATACTACTTTTCTGCGTAACAAGTTGAAGCTGCCAG                         ATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
genomic: TGGAAGAGGAAGTTATACTAC-TTTCTGCGTAACAAGTTGAAGCTGCCAGgtgagaactc ... gatcttctagATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
EST: gi|116394644|gb|EG437236.1|EG437236
EST:     AACAAGTTGAAGCTGCCAG                         ATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
genomic: AACAAGTTGAAGCTGCCAGgtgagaactc ... gatcttctagATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
EST: gi|116394645|gb|EG437237.1|EG437237
EST:     GTGGAAGAGGAAGTTATACTACTTTCTGCGTAACAAGTTGAAGCTGCCAG                         ATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
genomic: GTGGAAGAGGAAGTTATACTACTTTCTGCGTAACAAGTTGAAGCTGCCAGgtgagaactc ... gatcttctagATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
EST: gi|116394636|gb|EG437228.1|EG437228
EST:     GTGGAAGAGGAAGTTATACTACTTTCTGCGTAACAAGTTGAAGCTGCCAG                         ATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA
genomic: GTGGAAGAGGAAGTTATACTACTTTCTGCGTAACAAGTTGAAGCTGCCAGgtgagaactc ... gatcttctagATATCATTCTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGTTTAAACTCCCACCGTCAGCAAGCCGGTGGAAGAGGAAGTTATACTACTTTCTGCGTAACAAGTTGAAGCTGCCAGgtgagaactctttaatctttgatatgtgcatcatctgcaatgtccaagaacttatgaaacaaatagtttattgatctgtggttgtgtgatgatcttctag

- - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC