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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTATACTCATTGTCGCGGCCAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTACAGgtttggtttcatttaacttcgcaaagtatagaatctttgattgagttatcactgattgatctcttgtaatgtctgattctcacag

Basic information

species Arabidopsis thaliana
transcript AT2G35260.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116414687|gb|EG457279.1|EG457279
EST:     TCGCGGCCAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTACAG                         GGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCT
genomic: TCGCGGCCAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTACAGgtttggtttc ... attctcacagGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCT
EST: gi|164186921|gb|ES022831.1|ES022831
EST:     GCCAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTACAG                         GGTGCTCTGTCTGATATATTCTTGAAAGGA-CACAGTTGATGACAGATTCT
genomic: GCCAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTACAGgtttggtttc ... attctcacagGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCT
EST: gi|116414696|gb|EG457288.1|EG457288
EST:     AGAAGAGCTCTTTTACCGTGTTGCTGTACAG                         GGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCT
genomic: AGAAGAGCTCTTTTACCGTGTTGCTGTACAGgtttggtttc ... attctcacagGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCT
EST: gi|124927855|gb|EL005551.1|EL005551
EST:     TTTTACCGTGTTGCTGTACAG                         GGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCT
genomic: TTTTACCGTGTTGCTGTACAGgtttggtttc ... attctcacagGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCT
EST: gi|164016098|gb|EL986720.1|EL986720
EST:     GCCAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTACAG                         GGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCT
genomic: GCCAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTACAGgtttggtttc ... attctcacagGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCT
EST: gi|116414695|gb|EG457287.1|EG457287
EST:     TCGCGGCCAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTACAG                         GGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCT
genomic: TCGCGGCCAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTACAGgtttggtttc ... attctcacagGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTATACTCATTGTCGCGGCCAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTACAGgtttggtttcatttaacttcgcaaagtatagaatctttgattgagttatcactgattgatctcttgtaatgtctgattctcacag

- - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - -  AGAGCT