1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGGAGAGTATTCCGGATGAAGAATACATATGTAATCTGGAAGAAGCAGAAATGGTCAGACCCGGTGAACACATCACGATACTGACGTATTCAAGGATGAGgtactaaatcacaaccaaaagctcttcttcattgaaattgaaacaacacagaactaatagagtacttgtatcag
species | Arabidopsis thaliana |
transcript | AT2G34590.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATGGTCAGACCCGGTGAACACATCACGATACTGACGTATTCAAGGATGAG GTACCATGTAATGCAGGCTGCAAEST: gi|164028417|gb|ES207772.1|ES207772
genomic: ATGGTCAGACCCGGTGAACACATCACGATACTGACGTATTCAAGGATGAGgtactaaatc ... cttgtatcagGTACCATGTAATGCAGGCTGCAA
EST: GAACACATCACGATACTGACGTA-TCAAGGATGAG GTACCATGTAATGCAGGCTGCAAAGACGCTGGTGAACAAAGGGTATGATCCEST: gi|125029528|gb|EL101797.1|EL101797
genomic: GAACACATCACGATACTGACGTATTCAAGGATGAGgtactaaatc ... cttgtatcagGTACCATGTAATGCAGGCTGCAAAGACGCTGGTGAACAAAGGGTATGATCC
EST: TGAACACATCACGATACTGACGTATTCAAGGATGAG GTACCATGTAATGCAGGCTGCAAAGACGCTGGTGAACAAAGGGTATGATCCEST: gi|124983503|gb|EL056230.1|EL056230
genomic: TGAACACATCACGATACTGACGTATTCAAGGATGAGgtactaaatc ... cttgtatcagGTACCATGTAATGCAGGCTGCAAAGACGCTGGTGAACAAAGGGTATGATCC
EST: ATGGTCAGACCCGGTGAACACATCACGATACTGACGTATTCAAGGATGAG GTACCATGTAATGCAGGCTGCA
genomic: ATGGTCAGACCCGGTGAACACATCACGATACTGACGTATTCAAGGATGAGgtactaaatc ... cttgtatcagGTACCATGTAATGCAGGCTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAGAGTATTCCGGATGAAGAATACATATGTAATCTGGAAGAAGCAGAAATGGTCAGACCCGGTGAACACATCACGATACTGACGTATTCAAGGATGAGgtactaaatcacaaccaaaagctcttcttcattgaaattgaaacaacacagaactaatagagtacttgtatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG