1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CACGCTGCTATCCGTGAAGATATCAGTATCAATTTGGGTCCTCTTGAGGAGTTATCTAACTTATTCAAGGCTGATTTGCTTCTTTGTGAATCCGGTGGAGgtgaggtttcatttctagctagttcttgatagttaatctgcacgatatatagatttctgtttctcaaggaaccaatgagatatgaataggcttagtgttgtgtgttgcag
species | Arabidopsis thaliana |
transcript | AT2G34470.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTCTTTGTGAATCCGGTGGAG ATAATTTAGCTGCTAATTTCAGTAGAGAACTAGCTGACTATATCATCTACAEST: gi|86077129|gb|DR372886.1|DR372886
genomic: TTCTTTGTGAATCCGGTGGAGgtgaggtttc ... tgtgttgcagATAATTTAGCTGCTAATTTCAGTAGAGAACTAGCTGACTATATCATCTACA
EST: GTTATCTAACTTATTCAAGGCTGATTTGCTTCTTTGTGAATCCGGTGGAG ATAATTTAGCTGCTAATTTCAGTAGAGAACTAGCTGACTATATCATCTACAEST: gi|19879192|gb|AU240023.1|AU240023
genomic: GTTATCTAACTTATTCAAGGCTGATTTGCTTCTTTGTGAATCCGGTGGAGgtgaggtttc ... tgtgttgcagATAATTTAGCTGCTAATTTCAGTAGAGAACTAGCTGACTATATCATCTACA
EST: GTTATCTAACTTATTCAAGGCTGATTTGCTTCTTTGTGAATCCGGTGGAG ATAATTTAGCTGCTAATTTCAGTAGAGAACTAGCTGACTATATCATCTACAEST: gi|125199598|gb|EL214552.1|EL214552
genomic: GTTATCTAACTTATTCAAGGCTGATTTGCTTCTTTGTGAATCCGGTGGAGgtgaggtttc ... tgtgttgcagATAATTTAGCTGCTAATTTCAGTAGAGAACTAGCTGACTATATCATCTACA
EST: GTTATCTAACTTATTCAAGGCTGATTTGCTTCTTTGTGAATCCGGTGGAG ATAATTTAGCTGCTAATTT
genomic: GTTATCTAACTTATTCAAGGCTGATTTGCTTCTTTGTGAATCCGGTGGAGgtgaggtttc ... tgtgttgcagATAATTTAGCTGCTAATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACGCTGCTATCCGTGAAGATATCAGTATCAATTTGGGTCCTCTTGAGGAGTTATCTAACTTATTCAAGGCTGATTTGCTTCTTTGTGAATCCGGTGGAGgtgaggtttcatttctagctagttcttgatagttaatctgcacgatatatagatttctgtttctcaaggaaccaatgagatatgaataggcttagtgttgtgtgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG