1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTGTGGTTGTTTAGTAATACAAGATTGCCGTAGAGATACCCAACAAGAGCAATCAAACGAACAAGAAGAAGCTTTGTTCTGCTCATTGTGCAATGCTGAGgtatagtacatttttaccttctggttagaagcttctcattgcatcttgtactgtaacagcacattcttttcttgaag
species | Arabidopsis thaliana |
transcript | AT2G33640.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AATCAAACGAACAAGAAGAAGCTTTGTTCTGCTCATTGTGCAATGCTGAG GTACGTATGTTTAGCAAGCACTGTCGAAGTTGTGGCAAGTGTGTAGATGGGEST: gi|116400803|gb|EG443395.1|EG443395
genomic: AATCAAACGAACAAGAAGAAGCTTTGTTCTGCTCATTGTGCAATGCTGAGgtatagtaca ... tttcttgaagGTACGTATGTTTAGCAAGCACTGTCGAAGTTGTGGCAAGTGTGTAGATGGG
EST: AATCAAACGAACAAGAAGAAGCTTTGTTCTGCTCATTGTGCCATGCTGAG GTACGTATGTTTAGCA-GCACTGEST: gi|116401153|gb|EG443745.1|EG443745
genomic: AATCAAACGAACAAGAAGAAGCTTTGTTCTGCTCATTGTGCAATGCTGAGgtatagtaca ... tttcttgaagGTACGTATGTTTAGCAAGCACTG
EST: CGAACAAGAAGAAGCTTTGTTCTGCTCATTGTGCAATGCTGAG GCACGTATGTTTAGCAAGCACTGTCGAAGTTGTGGCAAGTGTGTAGATGGGEST: gi|116400801|gb|EG443393.1|EG443393
genomic: CGAACAAGAAGAAGCTTTGTTCTGCTCATTGTGCAATGCTGAGgtatagtaca ... tttcttgaagGTACGTATGTTTAGCAAGCACTGTCGAAGTTGTGGCAAGTGTGTAGATGGG
EST: AATCAAACGAACAAGAAGAAGCTTTGTTCTGCTCATTGTGCAATGCTGAG GTACGTATGTTTAGCAAGCACTGTCGAAGTTGTGGCAAGTGTGTAGATGGG
genomic: AATCAAACGAACAAGAAGAAGCTTTGTTCTGCTCATTGTGCAATGCTGAGgtatagtaca ... tttcttgaagGTACGTATGTTTAGCAAGCACTGTCGAAGTTGTGGCAAGTGTGTAGATGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTGGTTGTTTAGTAATACAAGATTGCCGTAGAGATACCCAACAAGAGCAATCAAACGAACAAGAAGAAGCTTTGTTCTGCTCATTGTGCAATGCTGAGgtatagtacatttttaccttctggttagaagcttctcattgcatcttgtactgtaacagcacattcttttcttgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG