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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGTTCAAGTACTTGTACACCTTTGTTCAAGTCGAAATTGAGTCTAAGATAGCAAAAGGATCGTCTAGCTGTACAAACGGTCTTCTCTGGTTAACCAGgtaaacgatgacaacatgtcaacaatacacacctttatttcgaagagagcagcttctcaaaaccatatatatcacctatgagtgaatctttcag

Basic information

species Arabidopsis thaliana
transcript AT2G33470.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080333|gb|DR376090.1|DR376090
EST:     ATAGCAAAAGGATCGTCTAGCTGTACAAACGGTCTTCTCTGGTTAACCAG                         AGCAATGGATTTCTTAGTGGAGCTGTTCCGAAACTTGGTAGCACATCAAGA
genomic: ATAGCAAAAGGATCGTCTAGCTGTACAAACGGTCTTCTCTGGTTAACCAGgtaaacgatg ... aatctttcagAGCAATGGATTTCTTAGTGGAGCTGTTCCGAAACTTGGTAGCACATCAAGA
EST: gi|124769981|gb|EH860111.1|EH860111
EST:     ATAGCAAAAGGATCGTCTAGCTGTACAAACGGTCTTCTCTGGTTAACCAG                         AGCAATGGATTTCTTAGTGGAG
genomic: ATAGCAAAAGGATCGTCTAGCTGTACAAACGGTCTTCTCTGGTTAACCAGgtaaacgatg ... aatctttcagAGCAATGGATTTCTTAGTGGAG
EST: gi|116453283|gb|EG495875.1|EG495875
EST:     ATAGCAAAAGGATCGTCTAGCTGTACAAACGGTCTTCTCTGGTTAACCAG                         AGCAATGGATTTCTTAGTGGAGCTGTTCCGAAACTTGGTAGCACATCAAGA
genomic: ATAGCAAAAGGATCGTCTAGCTGTACAAACGGTCTTCTCTGGTTAACCAGgtaaacgatg ... aatctttcagAGCAATGGATTTCTTAGTGGAGCTGTTCCGAAACTTGGTAGCACATCAAGA
EST: gi|116448815|gb|EG491407.1|EG491407
EST:     ATAGCAAAAGGATCGTCTAGCTGTACAAACGGGCTTCTCTGGTTAACCAG                         AGCAATGGATTTCTTAGTGGAGCTGTTCCGAAAC
genomic: ATAGCAAAAGGATCGTCTAGCTGTACAAACGGTCTTCTCTGGTTAACCAGgtaaacgatg ... aatctttcagAGCAATGGATTTCTTAGTGGAGCTGTTCCGAAAC
EST: gi|125097729|gb|EL154096.1|EL154096
EST:     ATAGCAAAAGGATCGTCTAGCTGTACAAACGGTCTTCTCTGGTTAACCAG                         AGCAATGGATTTCTTAGTGGAGCTGTTCCGAAACTTGGTAGCACATCAAG
genomic: ATAGCAAAAGGATCGTCTAGCTGTACAAACGGTCTTCTCTGGTTAACCAGgtaaacgatg ... aatctttcagAGCAATGGATTTCTTAGTGGAGCTGTTCCGAAACTTGGTAGCACATCAAG
EST: gi|86077274|gb|DR373031.1|DR373031
EST:     ATAGCAAAAGGATCGTCTAGCTGTACAAACGGTCTTCTCTGGTTAACCAG                         AGCAATGGATTTCTTAGTGGAGCTGTTCCGAAACTTGGTAGCACATCAAGA
genomic: ATAGCAAAAGGATCGTCTAGCTGTACAAACGGTCTTCTCTGGTTAACCAGgtaaacgatg ... aatctttcagAGCAATGGATTTCTTAGTGGAGCTGTTCCGAAACTTGGTAGCACATCAAGA
EST: gi|164210527|gb|ES045189.1|ES045189
EST:     ATAGCAAAAGGATCGTCTAGCTGTACAAACGGTCTTCTCTGGTTAACCAG                         AGCAATGGATTTCTTGGTGGAGCTGTTCCGAAACTTGGTAGCACATCAAGA
genomic: ATAGCAAAAGGATCGTCTAGCTGTACAAACGGTCTTCTCTGGTTAACCAGgtaaacgatg ... aatctttcagAGCAATGGATTTCTTAGTGGAGCTGTTCCGAAACTTGGTAGCACATCAAGA
EST: gi|124711228|gb|EH802630.1|EH802630
EST:     ATCGTCTAGCTGTACAAACGGTCTTCTCTGGTTAACCAG                         AGCAATGGATTTCTTAGTGGAGCTGTTCCGAAACTTGGTAGCACATCAAGA
genomic: ATCGTCTAGCTGTACAAACGGTCTTCTCTGGTTAACCAGgtaaacgatg ... aatctttcagAGCAATGGATTTCTTAGTGGAGCTGTTCCGAAACTTGGTAGCACATCAAGA