Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGCAAGATTGATTCTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatcctttttacattctcttaatccatgaatcataggaacctctagatacttgcaaagtcattgagaaatgtgcctggtggtttatttgtgtggttctgtgttgattgttacag

Basic information

species Arabidopsis thaliana
transcript AT2G32060.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G32060.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os07g05580.1 (Oryza sativa), 5'ss of exon 4
CTTTGCAAGATTGATTCTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatcctttttacattctcttaatccatgaatcataggaacctctagatacttgcaaagtcattgagaaatgtgcctggtggtttatttgtgtggttctgtgttgattgttacag
|||||||||||||| ||||||||||| |||||||||||||| || ||||| ||  ||||  |||||||||| ||||  |    ||    |||||  | || |    |  |  |  | ||   | ||||     |||  |    ||  |||  ||| ||||   |    | |               
CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCCTGCGTCGTTGTCAAGgtaactaatcgatccctcac---cttaacacttgga----attattcctttgaagatggcaat----ttgtaa----tgtttggctgttcattttcatttcccag---------------

upper sequence: AT2G32060.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os07g12650.3 (Oryza sativa), 5'ss of exon 3
CTTTGCAAGATTGATTCTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatcctttttacattctcttaatccatgaatcataggaacctcta-gatacttgcaaagtcattgagaaatgtgcctggtggtttatttgtgtggttctgtgttgattgttacag
|||||||||||||||||||||||||| || |||||||| || || ||||| ||  ||||  ||||||||   |||   ||   ||   |  || | ||   ||| |     | |||  |  | |||    || ||   |   ||| | |  |  ||||   |                         
CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataattgattacccaccatactacttcaaatatctttttgccatcttcggcatttg----gtaatgttggcttgttctttctcatttaccag-------------------------

upper sequence: AT2G32060.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G063340_T03 (Zea mays), 5'ss of exon 4
CTTTGCAAGATTGATTCTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatcctttttacattctcttaatccatgaatcataggaacctctagatacttgcaaagtcattgagaaatgtgcctggtggtttatttgtgtggttctgtgttgattgttacag
|||||||||||||| ||||||||||| |||||||||||||| || ||||| ||  ||||  |||||||| || |||  |     |   || || |      | || |  |   | | | |       | |    ||| |       |   || ||  |||   |  |                   
CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatcaatcacctacgttcctact------aacaaataattattttggtttaccttaggcaggtgacatgacattccactgtttcgtttcaattatcag----------------

upper sequence: AT2G32060.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G063340_T02 (Zea mays), 5'ss of exon 4
----------------------------------CTTTGCAAGATTGATTCTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatcctttttacattctcttaatccatgaatcataggaacctctagatacttgcaaagtcattgagaaatgtgcctggtggtttatttgtgtggttctgtgttgattgttacag
                                  |||||||||||||| ||||||||||| |||||||||||||| || ||||| ||  ||||  |||||||| || |||  |     |   || || |      | || |  |   | | | |       | |    ||| |       |   || ||  |||   |  |                   
GATCATAACAGCCTCCACTTATGCCCCCTTGCAGCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatcaatcacctacgttcctact------aacaaataattattttggtttaccttaggcaggtgacatgacattccactgtttcgtttcaattatcag----------------

upper sequence: AT2G32060.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G139900_T01 (Zea mays), 5'ss of exon 3
CTTTGCAAGATTGATTCTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatcctttttacattctcttaatccatgaatcataggaacctctagatacttgcaaagtcattgagaaatgtgcctggtggtttatttgtgtggttctgtgttgattgttacag
|||||||||||||| || |||||||| |||||||||||||| || ||||| ||| ||||  |||||||| || |||  |     | | || ||    || ||| ||       | | | |      |  |  | | | |           || || ||||   |                      
CTTTGCAAGATTGACTCCGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTTGTCAAGgtagcatatcaatcccttactttccta-caaattaattat-------tttggtttaccttagggcaagtaacatgacatttcactgtttcatttcaattaccag----------------

upper sequence: AT2G32060.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G132929_T03 (Zea mays), 5'ss of exon 3
CTTTGCAAGATTGATTCTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatcctttttacattctcttaatccatgaatcataggaacctctagatacttgcaaagtcattgagaaatgtgcctggtggtttatttgtgtggttctgtgttgattgttacag
||||||||||| || ||||||||||| || ||||||||||| || ||||| ||| | ||  ||||||| |  |   | |||   |   |  || | || |   |  |    |   || ||    | ||  |  ||      ||   |   ||| | |   |                         
CTTTGCAAGATCGACTCTGAGGGCAAGGCGAGGAAGGTTGTAGGCTGCTCCTGTGTTGTTGTCAAGgtgagtatatcatttcctacggtactactacaagcgac-cactttcaattatatttgcgtaagctgttttttgtctgctacatttggatcaccag-------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125176569|gb|EL195870.1|EL195870
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCACT
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACT
EST: gi|86017254|gb|DR313000.1|DR313000
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCACTAAAACATTGTCAAGAAGCATCTTGA
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACTAAA-CATTGTCAAGAAGCATCTTGA
EST: gi|86017245|gb|DR312991.1|DR312991
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCACTAAACATT
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACTAAACATT
EST: gi|86017237|gb|DR312983.1|DR312983
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCACTA
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACTA
EST: gi|86017232|gb|DR312978.1|DR312978
EST:     TGAGGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAAGAAGCATCTTGAT
genomic: TGAGGG-CAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAAGAAGCATCTTGAT
EST: gi|86017236|gb|DR312982.1|DR312982
EST:     TGAGGGCAATGCAAGGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGC
genomic: TGAGGGCAATGCAAGG-AAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGC
EST: gi|125214311|gb|EL228817.1|EL228817
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCACTAAACATTGT
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACTAAACATTGT
EST: gi|164096113|gb|EL986504.1|EL986504
EST:     GCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAAGAAGCATCTTGAT
genomic: GCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAAGAAGCATCTTGAT
EST: gi|86017228|gb|DR312974.1|DR312974
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGA
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGA
EST: gi|164130858|gb|ES172187.1|ES172187
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCAAGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCACTAAACA
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACTAAACA
EST: gi|164098284|gb|ES090731.1|ES090731
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACA
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACA
EST: gi|86017257|gb|DR313003.1|DR313003
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCACTAAACATTGT
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACTAAACATTGT
EST: gi|124944873|gb|EL020933.1|EL020933
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAAG
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAAG
EST: gi|86017234|gb|DR312980.1|DR312980
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCG--ATCAAG                         GATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAAGAAGCATCTTGAT
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAAGAAGCATCTTGAT
EST: gi|164000458|gb|ES046093.1|ES046093
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCACTAAACATTG
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACTAAACATTG
EST: gi|124788261|gb|EH877940.1|EH877940
EST:     AAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCACT
genomic: AAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACT
EST: gi|86017267|gb|DR313013.1|DR313013
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCACT
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACT
EST: gi|86017222|gb|DR312968.1|DR312968
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGATCATGTCTCGTGATCAAG                         GATTTCGGTGA
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGA
EST: gi|125011438|gb|EL083707.1|EL083707
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCACTAA
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACTAA
EST: gi|86017211|gb|DR312957.1|DR312957
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCACTAAACAT
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACTAAACAT
EST: gi|86017220|gb|DR312966.1|DR312966
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAAGAAGCATCTTGAT
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAAGAAGCATCTTGAT
EST: gi|86017250|gb|DR312996.1|DR312996
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCACTAAACA
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACTAAACA
EST: gi|86017270|gb|DR313016.1|DR313016
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAAGAAGCATCTTGAT
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAAGAAGCATCTTGAT
EST: gi|86017215|gb|DR312961.1|DR312961
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTG
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTG
EST: gi|86017247|gb|DR312993.1|DR312993
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAAGAAGCATCTTGAT
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAAGAAGCATCTTGAT
EST: gi|163975336|gb|ES118902.1|ES118902
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAG
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAG
EST: gi|86017258|gb|DR313004.1|DR313004
EST:     CTGAGGGCNACGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATT-CGGTGAGGA
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGA
EST: gi|86017268|gb|DR313014.1|DR313014
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCA
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCA
EST: gi|125042202|gb|EL114471.1|EL114471
EST:     TGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTACTCGTGATCAAG                         GATTTCGGTGAGGAGA
genomic: TGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGT-CTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGA
EST: gi|164060680|gb|ES130609.1|ES130609
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGAC
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGAC
EST: gi|86017233|gb|DR312979.1|DR312979
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAG
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAG
EST: gi|86017274|gb|DR313020.1|DR313020
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAAGAAGCATCTTGA
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAAGAAGCATCTTGA
EST: gi|125290528|gb|EL304613.1|EL304613
EST:     GCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAAGAAG
genomic: GCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAAGAAG
EST: gi|86017278|gb|DR313024.1|DR313024
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCACTAAA
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACTAAA
EST: gi|86017240|gb|DR312986.1|DR312986
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAA
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAA
EST: gi|86017212|gb|DR312958.1|DR312958
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAAGA
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAAGA
EST: gi|86017266|gb|DR313012.1|DR313012
EST:     CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAG                         GATTTCGGTGAGGAGACAACTGCACTAAACATTGTCA-GAAGCATCTTG
genomic: CTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatc ... attgttacagGATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAAGAAGCATCTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTTGCAAGATTGATTCTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatcctttttacattctcttaatccatgaatcataggaacctctagatacttgcaaagtcattgagaaatgtgcctggtggtttatttgtgtggttctgtgttgattgttacag

- - - - - - - - - - - - - -  AAGGAA