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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCGGATTCCTGGAATTGATATGGCCTTGAAGGATGGTGACAAATGGATGTTTGCTGGCCATGAAGTCCATGTTATGGATACTCCTGGCCACACAAAAGgttgtttataattctcatattaacttttggagctttgaatgcatgttcttgcattccagttaagcctttgctttgctaaatattccactttaaagtagtt...

Basic information

species Arabidopsis thaliana
transcript AT2G31350.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G31350.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os09g34100.1 (Oryza sativa), 5'ss of exon 4
GACCGGATTCCTGGAATTGATATGGCCTTGAAGGATGGTGACAAATGGATGTTTGCTGGCCATGAAGTCCATGTTATGGATACTCCTGGCCACACAAAAGgt---tgtttataattctcatattaacttttggagctttgaatgcat--gttcttgcattccagttaagcctttgc-tttgctaaatattccactttaaagtagtt
||  | ||||| || ||||| ||  |  | |  || ||||||| ||||||||||||||| ||| |||| | ||| ||||| |||||||| || |||  ||||   || ||  || | || |||||  |||     ||||   |   |   || | | |||   |  ||| ||     | |    | ||     | |||||      
GATAGAATTCCAGGCATTGACATAACTCTTAGTGAGGGTGACACATGGATGTTTGCTGGTCATCAAGTTCTTGTAATGGAAACTCCTGGTCATACATCAGgtgcgtgcttgcaagtttcttattagatttatcttctttctttttcttcattatcgaattat-gccaagtctgaatgtgtatgtactagatttccttaaac-----

upper sequence: AT2G31350.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA15G03320.1 (Glycine max), 5'ss of exon 4
GACCGGATTCCTGGAATTGATATGGCCTTGAAGGATGGTGACAAATGGATGTTTGCTGGCCATGAAGTCCATGTTATGGATACTCCTGGCCACACAAAAGgttgtttataattctcatattaacttttggagctttgaatgcatgttcttgcattccagttaagcctttgctttgctaaatattccactttaaagtagtt-----------------------
 |  |||||||||| ||||||||   |||||| |||||||| || |||||||||||||||||||| || | ||| ||||| |||||||| |||||  |||||    | | || ||| ||||  | || | |  | |   |  || || |    |   |   ||  ||    | |  ||  |    || |||      |||                       
AAAAGGATTCCTGGCATTGATATCCACTTGAACGATGGTGATAAGTGGATGTTTGCTGGCCATGAGGTGCGTGTAATGGACACTCCTGGTCACACCCAAGgtcacat-tcatgctc-tatttgcattagtaattcttctta-atattgtaaagtattaaaaaaatctggtttcttttatgtggctcatttttctagtgttctatttatttatactgtatgcag

upper sequence: AT2G31350.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA13G42070.2 (Glycine max), 5'ss of exon 4
GACCGGATTCCTGGAATTGATATGGCCTTGAAGGATGGTGACAAATGGATGTTTGCTGGCCATGAAGTCCATGTTATGGATACTCCTGGCCACACAAAAGgttgtttataattctcatattaacttttggagctttgaatgcatgttcttgcattccagttaagcctttgctttgctaaatattccactttaaagtagtt-----------------------
||  |||||||||| ||||||||   |||||| ||||| || || |||||||||||||||||||| || | ||| ||||| || ||||| || ||   ||||    |  |  |  | ||||  | || | |  | |   |  ||||| |    |   |   ||  || |  | |  |   |    || |||      |||                       
GAAAGGATTCCTGGCATTGATATCCACTTGAATGATGGAGATAAGTGGATGTTTGCTGGCCATGAGGTGCGTGTAATGGACACGCCTGGTCATACCCGAGgtcacattca--tgccctatttgcattagtaattcttctta-atgttgtaaagtgttaaaaaaatctgttttctattgtgtggctcatttttctagtgttctatttatttatactgtatgcag

upper sequence: AT2G31350.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv05s0102g01180.t01 (Vitis vinifera), 5'ss of exon 6
GACCGGATTCCTGGAATTGATATGGCCTTGAAGGATGGTGACAAATGGATGTTTGCTGGCCATGAAGTCCATGTTATGGATACTCCTGGCCACACAAAAGgttgtttataattctcatattaacttttggagctttgaatgcatgttcttgcattccagttaagcctttgctttgctaaatattccactttaaagtagtt--------
|| || ||||||||||||||||| |  ||||| ||||| ||||| ||||||||||| |||||||| ||   ||| || || |||||||| || ||   ||||  | | | ||    |     | |     |  | || ||     ||| | | ||  |   | |   |   ||    ||||   |   |  |||  |||         
GATCGAATTCCTGGAATTGATATAGTTTTGAAAGATGGAGACAAGTGGATGTTTGCAGGCCATGAGGTGGTTGTAATTGAAACTCCTGGTCATACCCGAGgtcatatttcatcactaatcatattagaaaatatctggat-----ttcgtacttttgaaacatgtgatcatttca--aaatcaactgatg-aaaacagtacatttctt