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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAATGTGTTGGGTGAGTCTAGGATGATGATTCCGGATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTGgtaaactacattttccattgttattgcttgctaagcgtcggtctagctttatgtattagtttataagaaacgctgagcggtgatttgaagtttaagagca...

Basic information

species Arabidopsis thaliana
transcript AT2G30410.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G30410.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA12G34820.1 (Glycine max), 5'ss of exon 3
GAAAATGTGTTGGGTGAGTCTAGGATGATGATTCCGGATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTGgtaaactacattttccattgttattgcttgctaagcgtcggtctagctttatgtattagtttataagaaacgctgagcggtgatttgaagtttaagagca-
|||||||| |||| ||||||||||||||||||||| || |||| ||| || || ||| | || ||||| ||| | ||       ||||||   |   | |  | ||  |  ||     |      |  | |  | |     |||| ||| |        ||        ||    | | ||    |  
GAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTGgtactgtttctctcgcttttctgctgtcatgttttaaccactttgacatgcctcatta-tttgttgccttttctctattaaaatcactattgtagcttctt

upper sequence: AT2G30410.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA13G35770.1 (Glycine max), 5'ss of exon 3
GAAAATGTGTTGGGTGAGTCTAGGATGATGATTCCGGATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTGgtaaa----ctacattttccattgttattgcttgctaagcgtcgg-tctagctttatgtattagtttataagaaacgctgagcggtgatttgaagtttaagagca
|||||||||||||  |||||||||||||||||||| || |||| ||| || || ||| | || ||||| ||| | ||    |  ||||||      ||    || |  |   | |  |||       ||    |   |   |    |||  | | |   || | ||  |   || |  | | |   |     
GAAAATGTGTTGGCAGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGAATATTGgtactgtttctgtgcttactgtatctctaacttttctgttgttttcttctgtcatggacatttttatgttttaaccactttgacatgctcagtattgcta-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47831397|gb|CK121081.1|CK121081
EST:     ATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTG                         GCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCAGAGATCGAAGATGCA
genomic: ATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTGgtaaactaca ... gaatttgcagGCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCAGAGATCGAAGATGCA
EST: gi|164136511|gb|ES055733.1|ES055733
EST:     ATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTG                         GCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCC
genomic: ATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTGgtaaactaca ... gaatttgcagGCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCC
EST: gi|164190655|gb|ES031732.1|ES031732
EST:     CGAGTCTGCATTGGCTGACCTCAAGTCCACTTTG                         GCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCAGAGATCGAAGATGCA
genomic: CGAGTCTGCATTGGCTGACCTCAAGTCCACTTTGgtaaactaca ... gaatttgcagGCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCAGAGATCGAAGATGCA
EST: gi|124727131|gb|EH818533.1|EH818533
EST:     TTTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTG                         GCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCC
genomic: -TTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTGgtaaactaca ... gaatttgcagGCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCC
EST: gi|124925894|gb|EL003818.1|EL003818
EST:     ATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTG                         GCGGAATTGGAAGAGACGGATGAGAAGG
genomic: ATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTGgtaaactaca ... gaatttgcagGCGGAATTGGAAGAGACGGATGAGAAGG
EST: gi|124966798|gb|EL040878.1|EL040878
EST:     TTGCCACAAACGTCTCGAGTCTGCATTAGGCTGACCTCAAGTCCACTTTG                         GCGGAATTGGAAGAGACGGA
genomic: TTGCCACAAACGTCTCGAGTCTGCATT-GGCTGACCTCAAGTCCACTTTGgtaaactaca ... gaatttgcagGCGGAATTGGAAGAGACGGA
EST: gi|164104260|gb|ES134447.1|ES134447
EST:     GTCTGCATTGGCTGACCTCAAGTCCACTTTG                         GCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCAGAGATCGAAGATGCA
genomic: GTCTGCATTGGCTGACCTCAAGTCCACTTTGgtaaactaca ... gaatttgcagGCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCAGAGATCGAAGATGCA
EST: gi|86074489|gb|DR370246.1|DR370246
EST:     ATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTG                         GCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCAGAGATCGAAGATGCA
genomic: ATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTGgtaaactaca ... gaatttgcagGCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCAGAGATCGAAGATGCA
EST: gi|125052468|gb|EL124244.1|EL124244
EST:     AAGTCCACTTTG                         GCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCAGAGATCGAAGATGCA
genomic: AAGTCCACTTTGgtaaactaca ... gaatttgcagGCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCAGAGATCGAAGATGCA
EST: gi|125147133|gb|EL181505.1|EL181505
EST:     ATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTG                         GCGGAATTGGA
genomic: ATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTGgtaaactaca ... gaatttgcagGCGGAATTGGA