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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCTGCCTTTTTCTAATGCTCCAGAGGATGATAGGAGTCTTCCTGATGTTAATTTGGGTCTTTATGATGATGTGATCGTGTTTGATCATGTTGAGAAGgtatactagtatttgcatcttcctgcggattatgaattgaagagtttatctagtttttcttgatcctgttgagcacag

Basic information

species Arabidopsis thaliana
transcript AT2G29690.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G29690.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G23680.2 (Glycine max), 5'ss of exon 4
GAAGCTGCCTTTTTCTAATGCTCCAGAGGATGATAGGAGTCTTCCTGATGTTAATTTGGGTCTTTATGATGATGTGATCGTGTTTGATCATGTTGAGAAGgtatacta-gtatttgcatct----tcctgcg-------gattatgaattg----aagagtttatctagtttttcttgatcctgttgagcacag
||| || || ||||||||||| ||||  ||||| || |  |||||||||||| || |||| ||||||||   |||||| ||||||||||||||||| ||||||  ||   | ||||  |      | ||| |       |||| |   |||    || ||  ||| |  ||| | ||||   |||| |   |||
GAAACTTCCATTTTCTAATGCCCCAGTAGATGACAGAAACCTTCCTGATGTTCATCTGGGCCTTTATGACAGTGTGATTGTGTTTGATCATGTTGAAAAGgtactctttatgtttgattgacaggtgctgtgcaaatttgattgttgcttgtaagaaaagcatatgttatttct-ttgactttgttcaatccag

upper sequence: AT2G29690.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G43210.1 (Glycine max), 5'ss of exon 1
GAAGCTGCCTTTTTCTAATGCTCCAGAGGATGATAGGAGTCTTCCTGATGTTAATTTGGGTCTTTATGATGATGTGATCGTGTTTGATCATGTTGAGAAGgtatactagtatttgcatcttcctgcg-------gattatgaattg---aagagtttatctagtttttcttgatcctgttgagcacag--------------------------------------------------------------------------------------------
||| || || ||||||||||| ||||  ||||| || |  | |||||||||| || |||| |||||||||  |||||| ||||||||||| || || ||||||  |   | ||||     | ||| |       |||| |   |||    | | ||   ||  | |||   | |    |   ||  |                                                                                             
GAAACTTCCATTTTCTAATGCCCCAGCAGATGACAGAAACCCTCCTGATGTTCATCTGGGCCTTTATGATAGTGTGATTGTGTTTGATCACGTGGAAAAGgtactcgtatgtttgacaggtgctgtgcacatgtgattgttgcttgtaagaaaattctgctgctatttaccgctttattcatgcttactgttttggtcctgcagagtatttctattttctttatttggctttgatcaacccagaaagcatatgtaatttctttgactttgttcaatccag