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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTGACTGAACCTCTTTTCGTCGAGGTTGATCAAATCTACCATTTAGCATGTCCCGCTTCTCCAATTTTCTACAAATACAACCCCGTTAAGgtttgttaaacttcgttaatcaaaactcgcaaaatgctagctgatatatttttatgacttatgatcatatatccttttcatctttctaatggcag

Basic information

species Arabidopsis thaliana
transcript AT2G28760.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G28760.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA12G06980.2 (Glycine max), 5'ss of exon 4
ATGTGACTGAACCTCTTTTCGTCGAGGTTGATCAAATCTACCATTTAGCATGTCCCGCTTCTCCAATTTTCTACAAATACAACCCCGTTAAGgtttgttaaacttcgtt-aatcaaaactcgcaaaa-tgctagctgatatatttttatgacttatgatcatatatccttttcatctttctaatggcag-------
|||| || || |   | ||  | ||||||||||||||||| ||| | ||||| || ||||||||||||||||||||||||||||| || |||||  |      |||||  | || |   |   |    ||  |  |   ||  |  | | |  | |   |||   |  |||    |     | ||||         
ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCAGCTTCTCCAATTTTCTACAAATACAACCCTGTAAAGgtggg----ggttcgtagagtctacctttatatttctgtcatttaccatgatcctgtcagctgtctacatgatttatttcttgcacagaagtggctttaggtct

upper sequence: AT2G28760.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 5
ATGTGACTGAACCTCTTTTCGTCGAGGTTGATCAAATCTACCATTTAGCATGTCCCGCTTCTCCAATTTTCTACAAATACAACCCCGTTAAGgt-----ttgttaaacttcgttaatcaaaactcgcaaaatgctagctgatatatttttatgacttatgatcatatatccttttcatctttctaatggcag----
|||| || || |   | ||  | ||||||||||||||||| ||| | ||||| || ||||||||||| ||||||||||||||||| || |||||     || ||| | |    |  |  |     |  |  | | |  ||||   | |        ||  || || |||   || ||      || |   ||    
ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCTGCTTCTCCAATCTTCTACAAATACAACCCTGTAAAGgtgggggttcttagattctacttttatatttctgtcatttacca--tgatcc-tgtcagctgtctac-atgatttatttcttgcacaggagtagttttagttcc

upper sequence: AT2G28760.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA13G40960.1 (Glycine max), 5'ss of exon 6
ATGTGACTGAACCTCTTTTCGTCGAGGTTGATCAAATCTACCATTTAGCATGTCCCGCTTCTCCAATTTTCTACAAATACAACCCCGTTAAGgt------ttgttaaacttcgttaatcaa--aactcgcaa---aatgctagctgatatatttttatgacttatgatc-atatatccttttcatctttctaatggcag
|||| || || ||| | ||  ||||||||||||| ||||||||| | ||||| || || ||||| ||||||||||||||||| || || |||||      |||  |  || | ||  || |  || | ||     |||   |  | |||  | || ||| |  ||| |  | | ||    |||  |||  |        
ATGTCACGGAGCCTTTATTGATCGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagttttgagagtctgcttttgtctaataattggccttttaattgaaaatcatacttattcatgtcaaatgttggagaaattacattctacttcatt-------

upper sequence: AT2G28760.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA15G04500.2 (Glycine max), 5'ss of exon 6
ATGTGACTGAACCTCTTTTCGTCGAGGTTGATCAAATCTACCATTTAGCATGTCCCGCTTCTCCAATTTTCTACAAATACAACCCCGTTAAGgtttgttaaacttcgttaatcaaaactcgcaaaa-tgctagctgatatattt-ttatgacttatgatcatatatccttttcatctttctaatggcag--------
|||| || || ||| | ||  ||||||||||||| ||||||||| | ||||| || || ||||| ||||||||||||||||| || || ||||| |     | || |  | ||     | | | |  |  ||  ||   | |   ||   | | ||  | ||  ||        |      ||| |||         
ATGTCACGGAGCCTTTATTGATCGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtat-----agtttgagagtctgcttttgtatatctaataattggcctttcaattgaaaatcatacttattgatgtcaactgttgaagaaattgcattctacttc

upper sequence: AT2G28760.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA11G15020.1 (Glycine max), 5'ss of exon 5
ATGTGACTGAACCTCTTTTCGTCGAGGTTGATCAAATCTACCATTTAGCATGTCCCGCTTCTCCAATTTTCTACAAATACAACCCCGTTAAGgtttg---ttaaacttcgtt--aatcaaaactcgcaaaatgctagctgatatatttttatgactta-tgatcatatatccttttcatctttctaatggcag
|||| ||||||||| |     | ||||||||||| ||||||||| | ||||| ||||| ||||| |||||||||||||| || || || ||||| |    || |   | |||      | |  ||   | ||  |   |   |||     ||   ||  | | |  |||    |||    |||   ||  || 
ATGTCACTGAACCTTTGACGATTGAGGTTGATCAGATCTACCATCTTGCATGCCCCGCATCTCCTATTTTCTACAAATATAATCCTGTGAAGgtatagttttgagtcttgttttgtctatatttcattatattttgattagcatacaaacatatttttctcagctgataaaggttttgcttttaacatt-cat

upper sequence: AT2G28760.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 5
ATGTGACTGAACCTCTTTTCGTCGAGGTTGATCAAATCTACCATTTAGCATGTCCCGCTTCTCCAATTTTCTACAAATACAACCCCGTTAAGgtttg---ttaaacttcgtt--aatcaaaactcgcaaaatgctagctgatatatttttatgacttatgatcatatatccttttcatctttctaatggcag-
|||| ||||||||| |     | ||||||||||| ||||||||| | || || || || ||||| |||||||||||||| || ||||| ||||| |    || |   | |||      | |  ||   |  |  |   ||  ||      || | || |    |   ||     |  |  || |||       
ATGTCACTGAACCTTTGACGATTGAGGTTGATCAGATCTACCATCTTGCGTGCCCTGCATCTCCTATTTTCTACAAATATAATCCCGTGAAGgtatagttttgagtcttgttttgtgtatatttcattatcttttgcttggcatgcaaacat-atttttctcaactgataaaggtttttcttttaacattcat

upper sequence: AT2G28760.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EFJ17446 (Selaginella moellendorffii), 5'ss of exon 4
ATGTGACTGAACCTCTTTTCGTCGAGGTTGATCAAATCTACCATTTAGCATGTCCCGCTTCTCCAATTTTCTACAAATACAACCCCGTTAAGgtttgttaaacttcgttaatcaaaactcgcaaaatgctagctgatatatttttatgacttatgatcatatatccttttcatctttctaatggcag
| || || || ||| |  | || || ||||| || || |||||| | ||||||||||||||||| || |||||||| ||||| ||||| || ||  || |    |    || ||  ||| |   |   | |  || |   ||||   |                                       
ACGTCACGGAGCCTTTGCTTGTGGAAGTTGACCAGATTTACCATCTGGCATGTCCCGCTTCTCCCATCTTCTACAAGTACAATCCCGTGAAAgtgagt-agctgtttaaaaacactactagttcatcccaa--tgctggcttttccag---------------------------------------

upper sequence: AT2G28760.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EFJ35029 (Selaginella moellendorffii), 5'ss of exon 4
ATGTGACTGAACCTCTTTTCGTCGAGGTTGATCAAATCTACCATTTAGCATGTCCCGCTTCTCCAATTTTCTACAAATACAACCCCGTTAAGgtttgttaaacttcgttaatcaaaactcgcaaaatg-ctagctgatatatttttatgacttatgatcatatatccttttcatctttctaatggcag
| || || || ||| |  | || || ||||| || || |||||| | ||||||||||||||||| || |||||||| ||||| ||||| || ||  ||  | ||  ||| |  || |||   |      ||   || |   ||||   |                                       
ACGTCACGGAGCCTTTGCTTGTGGAAGTTGACCAGATTTACCATCTGGCATGTCCCGCTTCTCCCATCTTCTACAAGTACAATCCCGTGAAAgtgagt--agct--gtttaaaaacactactagttcatctcaatgctggcttttccag---------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86061221|gb|DR356978.1|DR356978
EST:     ATTTAGCATGTCCCGCTTCTCCAATTTTCTACAAATACAACCCCGTTAAG                         ACGATAAAAACAAATTGTGATTGGCACACTT
genomic: ATTTAGCATGTCCCGCTTCTCCAATTTTCTACAAATACAACCCCGTTAAGgtttgttaaa ... ctaatggcagACGATAAAAACAAAT-GTGATTGGCACACTT
EST: gi|152038570|gb|AV831033.2|AV831033
EST:     ATTTAGCATGTCCCGCTTCTCCAATTTTCTACAAATACAACCCCGTTAAG                         ACGATAAAAACAAATGTGATTGGCACACTTAACATGTTAGGACTAGCTAAG
genomic: ATTTAGCATGTCCCGCTTCTCCAATTTTCTACAAATACAACCCCGTTAAGgtttgttaaa ... ctaatggcagACGATAAAAACAAATGTGATTGGCACACTTAACATGTTAGGACTAGCTAAG
EST: gi|86061222|gb|DR356979.1|DR356979
EST:     ATTTAGCATGTCCCGCTTCTCCAATTTTCTACAAATACAACCCCGTTAAG                         ACGATAAAAACAAATGTGATTGGCACAC
genomic: ATTTAGCATGTCCCGCTTCTCCAATTTTCTACAAATACAACCCCGTTAAGgtttgttaaa ... ctaatggcagACGATAAAAACAAATGTGATTGGCACAC