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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATGTACTCCAGAAGGGGAAGAGATTGTCAAAAGTGGAAAGCTGAATCTAGTTGATCTTGCTGGTTCAGAGAATATTTCACGGTCTGGTGCTCGAGAGgtacctaaaacagtcaggaaccatgattttttattgacagaataatagtgtcttaccttgatgatttactaaacaatataagagtcactattttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G28620.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G28620.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os05g02670.3 (Oryza sativa), 5'ss of exon 5
GGAATGTACTCCAGAAGGGGAAGAGATTGTCAAAAGTGGAAAGCTGAATCTAGTTGATCTTGCTGGTTCAGAGAATATTTCACGGTCTGGTGCTCGAGAGgtacctaaaacagtcaggaaccatgattttttattgacagaataatagtgtcttaccttgatgatttactaaacaatataagagtcactattttgcag---------
||||   ||||  || || || |||||  |||||| ||| ||||| |||||||| ||||| ||||||||||| ||||| |||||||| |||||| |||| ||   ||||    | |  |      |||  ||  | | |  |||||| | ||| | ||   |  |  |||   |||||  |   |   ||||               
GGAACTGACTCATGAGGGTGAGGAGATGATCAAAATTGGGAAGCTTAATCTAGTCGATCTAGCTGGTTCAGAAAATATCTCACGGTCAGGTGCTAGAGATgtgagtaaac---ttaaaattttctattcattgattaaaatataata-tatct-atctgatttttcaactgcccaatactacttttgatattgaattatcattgcag

upper sequence: AT2G28620.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G024576_T01 (Zea mays), 5'ss of exon 4
GGAATGTACTCCAGAAGGGGAAGAGATTGTCAAAAGTGGAAAGCTGAATCTAGTTGATCTTGCTGGTTCAGAGAATATTTCACGGTCTGGTGCTCGAGAGgtacctaaaacagtcaggaaccatgattttttattga-cagaataatagtgtcttaccttgatgatttactaaacaa--tataagagtca--ctattttgcag
||||   ||||  || || || |||||  |||| | ||||||||| ||||| || ||||| ||||||||||| ||||| ||||| || |||||| |||| ||   | |       | |  | || ||   | |   |    |||  |  | ||| | |||    ||||| ||||  |  | ||| |   |  |||  ||||||
GGAACTCACTCATGAGGGTGAGGAGATGATCAAGATTGGAAAGCTCAATCTTGTCGATCTAGCTGGTTCAGAAAATATATCACGCTCAGGTGCTAGAGATgtgagttacttctaaatgtccaattatagataaaaaaatcaaatgcttctctctgatctttcaaatttaataaagcacttgtaacatcgaatctacattgcag

upper sequence: AT2G28620.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA12G07910.1 (Glycine max), 5'ss of exon 4
GGAATGTACTCCAGAAGGGGAAGAGATTGTCAAAAGTGGAAAGCTGAATCTAGTTGATCTTGCTGGTTCAGAGAATATTTCACGGTCTGGTGCTCGAGAGgtacctaaaacagtcaggaaccatgattttttattgaca---gaataatagtgtctt-accttgatgatttactaaacaatataagagtcactattttgcag
||| ||||||||||| || ||||| ||  | ||| |||| ||||| ||||| || || ||||| ||||| |||||||||||||| || |||||  |||||||| | ||     |  |     ||  |   |  |  |||    ||| | | | | |  | |   ||||    ||      | |  ||  || ||||      
GGAGTGTACTCCAGAGGGTGAAGAAATGATTAAATGTGGGAAGCTAAATCTTGTGGACCTTGCAGGTTCTGAGAATATTTCACGTTCCGGTGCAAGAGAGgtatcaaatgattttggtgtttattttgggtagtgtacattcaaatgacattatttggaacactatgacagcctgtttgttttgtga--cattattgattga

upper sequence: AT2G28620.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA11G15520.2 (Glycine max), 5'ss of exon 4
GGAATGTACTCCAGAAGGGGAAGAGATTGTCAAAAGTGGAAAGCTGAATCTAGTTGATCTTGCTGGTTCAGAGAATATTTCACGGTCTGGTGCTCGAGAGgtacctaaaacagtcaggaaccatgattttttattg-acagaataatagtgtcttaccttga-tgatttactaaacaatataagagtcactattttgcag---
 || ||||||||||| || ||||| ||  | ||| |||| ||||| ||||| || || ||||| ||||| |||||||||||||| || |||||  |||||||| | |||  | |  ||     | |||||   | |   | | | | | | | |||  | ||    | |   |  |  | |     | |  |  ||   |   
AGAGTGTACTCCAGAGGGTGAAGAAATGATTAAATGTGGGAAGCTAAATCTTGTGGACCTTGCAGGTTCTGAGAATATTTCACGTTCCGGTGCAAGAGAGgtatc-aaatgattttggtgt--ttattttgggtagtgtacattcaaattatattatttggaacagtatgacagcctcttttttctttatgagattattgatt

upper sequence: AT2G28620.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv06s0004g03810.t01 (Vitis vinifera), 5'ss of exon 5
GGAATGTACTCCAGAAGGGGAAGAGATTGTCAAAAGTGGAAAGCTGAATCTAGTTGATCTTGCTGGTTCAGAGAATATTTCACGGTCTGGTGCTCGAGAGgtacc-taaaacagtcaggaaccatgattttttattgacaga-ataatagtgtct---taccttgatgattta---ctaaacaatataagagtcactattttgcag
||| ||||||||||| ||||| |||||  | ||| |||| ||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||| ||||||||   || |||   |   | |  | ||| |    ||  | |  || |  ||  |      || |    | ||   ||   |||||||  |  ||| || |     
GGAGTGTACTCCAGAGGGGGAGGAGATGATTAAATGTGGCAAGCTTAATCTTGTTGACCTTGCTGGTTCTGAGAATATTTCACGGTCTGGTGCTAGAGAGgtataatataacttgcgctagcagtcattctactctggtacatgtactgatgcatggacggctagcaagtctatacctttgcaatatattaa-cacaatat-----