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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCACATTTCAACCCTAACAACATGACACACGGAGCTCCAGAAGATGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATGgtattttacatcctccattcaagttcccatacaatttggctgtcttcgataatcaaaaacctgtttgaactaagtactgtttttgtaacaacag

Basic information

species Arabidopsis thaliana
transcript AT2G28190.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G28190.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os08g44770.2 (Oryza sativa), 5'ss of exon 4
GACCACATTTCAACCCTAACAACATGACACACGGAGCTCCAGAAGATGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATGgtat----tttacatcctccattcaagttcccatacaatttggctgtcttcgataatcaaa--aacctgtttgaactaagtactgtttttgtaacaacag--------
|||||||||| ||||| |||||  |||| ||||| || |||||||||||   |||||||||||||||||||||||||||   ||||||||| || |||||    || |  |  ||  | | | | |   |   || |  || |||   | ||||       | |  ||    || |   ||| | | |||     |        
GACCACATTTTAACCCAAACAATTTGACGCACGGTGCACCAGAAGATGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCCAATGCTGAAGgtatagccttcatgtaatcactacgaatgcatttttgatgtttctctctaaaacaatcttcttggcatacttattttatggtgtgtctgtttaattgttgtcatacag

upper sequence: AT2G28190.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G106928_T02 (Zea mays), 5'ss of exon 4
GACCACATTTCAACCCTAACAACATGACACACGGAGCTCCAGAAGATGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATGgta-----ttttacatcctccattcaagttcccata--------caatttggctgtcttcgataatcaaaaacctgtttgaactaagtactgtttttgtaacaacag--
|||||||||| || || |||||  |||| ||||| || |||||||| ||   |||||||||||||||||||||||||||   ||| ||||| || ||||     | |  || ||   | |  | ||   |||        ||| ||   | |  | ||| || | |    | | ||   |   |  |    | ||    | |   
GACCACATTTTAATCCAAACAATCTGACGCACGGTGCACCAGAAGACGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctgtagcaaccagtagtacacttgtgatattcattagcaaatttcttcttctggattatgacatttttttatggcgtgtttgtttaactggttgtgatacag

upper sequence: AT2G28190.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA12G30260.1 (Glycine max), 5'ss of exon 4
GACCACATTTCAACCCTAACAACATGACACACGGAGCTCCAGAAGATGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATGgtattttacatcctccattcaagttcccatacaatttggctgtcttcgataatcaaaaacctgtttgaactaagtactgtttttgtaacaacag
| ||||||||||| ||||| ||  | | ||| || ||||| || ||| |    || ||||||||||||||||||||||||  ||| ||||||||||||| |   | || | |  ||   || |  |  |||      || ||  | || | || | |  |     |    |||  ||||| |||  ||||
GGCCACATTTCAATCCTAATAAACTCAAACATGGTGCTCCGGAGGATAAAATTCGCCATGCGGGTGACCTGGGAAACATAGTTGCTAATGCCGATGgtaat--gcttctttccctcttctttctttggaat------gtttttta-aacctaagatccatgccctcattttaccattttt-taagtacag

upper sequence: AT2G28190.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv06s0061g00750.t01 (Vitis vinifera), 5'ss of exon 4
GACCACATTTCAACCCTAACAACATGACACACGGAGCTCCAGAAGATGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATGgtattttacatcctccattcaagttcccatacaatttggctgtcttcgataatcaaaaacctgtttgaactaagtactgttt-ttgtaacaacag
|| |||||||||| || ||    |||||||| || ||||| ||||||||   ||||||||||||||||||||||||||||  ||||||||| || ||||    | ||  | ||||||  || | | |   | | | | ||||   |     |    || |    | |   |  ||||  ||||||   |||
GAGCACATTTCAATCCAAATGGGATGACACATGGTGCTCCTGAAGATGATGTCCGTCATGCGGGTGACCTGGGAAACATAGTTGCCAATGCTGAAGgtaca--aaatgtttcattcattttgctaaat--tcttgttatcttttctgtatgaggcgctat----attttttgttgttcattgtaatg-cag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124742215|gb|EH833377.1|EH833377
EST:     TGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATG                         GCGTGGCAGAAACAACAATAGTGGACAATCAG
genomic: TGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATGgtattttaca ... gtaacaacagGCGTGGCAGAAACAACAATAGTGGACAATCAG
EST: gi|124732629|gb|EH824031.1|EH824031
EST:     TGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATG                         GCGTGGCAGAAACAACAATAGTGGACAATCAGATTCCT
genomic: TGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATGgtattttaca ... gtaacaacagGCGTGGCAGAAACAACAATAGTGGACAATCAGATTCCT
EST: gi|164067309|gb|ES173463.1|ES173463
EST:     TGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATG                         GCGTGGCAGAAA
genomic: TGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATGgtattttaca ... gtaacaacagGCGTGGCAGAAA
EST: gi|125198821|gb|EL213775.1|EL213775
EST:     TGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATG                         GCGTGGCAGAAACAACAA
genomic: TGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATGgtattttaca ... gtaacaacagGCGTGGCAGAAACAACAA
EST: gi|301502082|gb|HO207622.1|HO207622
EST:     TGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATG                         GCGTGGCAGAAACAACAATAGTGGACAATCAG
genomic: TGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATGgtattttaca ... gtaacaacagGCGTGGCAGAAACAACAATAGTGGACAATCAG
EST: gi|116429789|gb|EG472381.1|EG472381
EST:     TGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATG                         GCGTGGCAGAAACAACAATAGTGGACAATCAG
genomic: TGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATGgtattttaca ... gtaacaacagGCGTGGCAGAAACAACAATAGTGGACAATCAG
EST: gi|125092275|gb|EL150098.1|EL150098
EST:     TGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATG                         GCGTGGCAGAAACAA
genomic: TGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATGgtattttaca ... gtaacaacagGCGTGGCAGAAACAA
EST: gi|124796998|gb|EH886677.1|EH886677
EST:     GTGACCTGGGAAACATAAATGCCAATGCCGATG                         GCGTGGCAGAAACAACAATAGTGGACAATCAG
genomic: GTGACCTGGGAAACATAAATGCCAATGCCGATGgtattttaca ... gtaacaacagGCGTGGCAGAAACAACAATAGTGGACAATCAG
EST: gi|124725556|gb|EH816958.1|EH816958
EST:     AAACATAAATGCCAATGCCGATG                         GCGTGGCAGAAACAACAATAGTGGACAATCAG
genomic: AAACATAAATGCCAATGCCGATGgtattttaca ... gtaacaacagGCGTGGCAGAAACAACAATAGTGGACAATCAG
EST: gi|124735252|gb|EH826654.1|EH826654
EST:     CGGGTGACCTGGGAAACATAAATGCCAATGCCGATG                         GCGTGGCAGAAACAACAATAGTGGACAATCAG
genomic: CGGGTGACCTGGGAAACATAAATGCCAATGCCGATGgtattttaca ... gtaacaacagGCGTGGCAGAAACAACAATAGTGGACAATCAG
EST: gi|125013658|gb|EL085927.1|EL085927
EST:     TGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATG                         GCGTGGCAGAAACAACAATAGTGGACAATCAG
genomic: TGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATGgtattttaca ... gtaacaacagGCGTGGCAGAAACAACAATAGTGGACAATCAG
EST: gi|124802294|gb|EH891241.1|EH891241
EST:     TGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATG                         GCGTGGCAGAAACAA
genomic: TGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATGgtattttaca ... gtaacaacagGCGTGGCAGAAACAA
EST: gi|124902527|gb|EH976607.1|EH976607
EST:     AAACATAAATGCCAATGCCGATG                         GCGTTGGCAGAAACAACAATAGTGGACAATCAG
genomic: AAACATAAATGCCAATGCCGATGgtattttaca ... gtaacaacagGCG-TGGCAGAAACAACAATAGTGGACAATCAG
EST: gi|164086541|gb|ES148154.1|ES148154
EST:     TGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATG                         GCGTGGCAGAAACAACAATAGTGGACAATCAG
genomic: TGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATGgtattttaca ... gtaacaacagGCGTGGCAGAAACAACAATAGTGGACAATCAG
EST: gi|116462064|gb|EG504656.1|EG504656
EST:     TGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATG                         GCGTGGCAGAAACAACAATAGTGGACAATCAG
genomic: TGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATGgtattttaca ... gtaacaacagGCGTGGCAGAAACAACAATAGTGGACAATCAG
EST: gi|86080763|gb|DR376520.1|DR376520
EST:     TGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATG                         GCGTGGCAGAAACAACAATAGTGGACAATCAG
genomic: TGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATGgtattttaca ... gtaacaacagGCGTGGCAGAAACAACAATAGTGGACAATCAG
EST: gi|125035483|gb|EL107752.1|EL107752
EST:     TGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATG                         GCGTGGCAGAAACAACAATAG
genomic: TGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATGgtattttaca ... gtaacaacagGCGTGGCAGAAACAACAATAG
EST: gi|125054687|gb|EL125250.1|EL125250
EST:     TGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATG                         GCGTGGCAGAAACAACAATAGTGGACAATCAG
genomic: TGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATGgtattttaca ... gtaacaacagGCGTGGCAGAAACAACAATAGTGGACAATCAG
EST: gi|124972982|gb|EL046643.1|EL046643
EST:     GAGTGCCGTCATTGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATG                         GCGTGGCAGAAACAACAATAGTGGACAA
genomic: GAGTGCCGTCA-TGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATGgtattttaca ... gtaacaacagGCGTGGCAGAAACAACAATAGTGGACAA
EST: gi|124785862|gb|EH875541.1|EH875541
EST:     CGGGTGACCTGGGAAACATAAATGCCAATGCCGATG                         GCGTGGCAGAAACAACAATAGTGGACAATCAG
genomic: CGGGTGACCTGGGAAACATAAATGCCAATGCCGATGgtattttaca ... gtaacaacagGCGTGGCAGAAACAACAATAGTGGACAATCAG
EST: gi|125015457|gb|EL087726.1|EL087726
EST:     GGGTGACCTGGGAAACATAAATGCCAATGCCGATG                         GCGTGGCAGAAACAACAATAGTGGACAATCAGAT
genomic: GGGTGACCTGGGAAACATAAATGCCAATGCCGATGgtattttaca ... gtaacaacagGCGTGGCAGAAACAACAATAGTGGACAATCAGAT
EST: gi|125325576|gb|EL339656.1|EL339656
EST:     CCGTCATGCGGGTGACCTGGGAAACATAAATTGCCAATGCCGATG                         GCGTGGCAGAAACAACAATAGTGGACAATCAG
genomic: CCGTCATGCGGGTGACCTGGGAAACATAAA-TGCCAATGCCGATGgtattttaca ... gtaacaacagGCGTGGCAGAAACAACAATAGTGGACAATCAG
EST: gi|116438236|gb|EG480828.1|EG480828
EST:     TGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATG                         GCGTGGCAGAAACAACAATAGTGGACAATCAG
genomic: TGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATGgtattttaca ... gtaacaacagGCGTGGCAGAAACAACAATAGTGGACAATCAG