1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTTGTTAAGAAGCTTGCTAAGTCTTACCATGCTTTCTTGGCTTCTGAGTCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcgagtttcttcaataactttgatacttggtatattatatggtcatcatttagtttcgttttcaagctctatgtctgaggtttctacttgtttgattgatgaacag
species | Arabidopsis thaliana |
transcript | AT2G27530.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTTCTTGGTCCTGGTCTTAACAAGGCAG GAAAGTTCCCAACACTTGTGAGTCACCAAGAGTCATTGGAAGCAAAGGTGAEST: gi|164202428|gb|ES139390.1|ES139390
genomic: CTTCTTGGTCCTGGTCTTAACAAGGCAGgcgagtttct ... tgatgaacagGAAAGTTCCCAACACTTGTGAGTCACCAAGAGTCATTGGAAGCAAAGGTGA
EST: CTGGTCTTAACAAGGCAG GAAAGTTCCCAACACTTGTGAGTCACCAAGAGTCATTGGAAGCAAAGGTGAEST: gi|125222155|gb|EL236240.1|EL236240
genomic: CTGGTCTTAACAAGGCAGgcgagtttct ... tgatgaacagGAAAGTTCCCAACACTTGTGAGTCACCAAGAGTCATTGGAAGCAAAGGTGA
EST: GTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG GAAAGTTCCCAACACTTGTGAGTCACCAAGAGTCAEST: gi|86077209|gb|DR372966.1|DR372966
genomic: GTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcgagtttct ... tgatgaacagGAAAGTTCCCAACACTTGTGAGTCACCAAGAGTCA
EST: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG GAAAGTTCCCAACACTTGTGAGTCACCAAGAGTCATTGGAAGCAAAGGTGAEST: gi|125082027|gb|EL143040.1|EL143040
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcgagtttct ... tgatgaacagGAAAGTTCCCAACACTTGTGAGTCACCAAGAGTCATTGGAAGCAAAGGTGA
EST: GATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG GAAAGTTCCCAACACTTGTGAGTCACCAAGAGTCATTGGAAGCAAAGGTGAEST: gi|164217427|gb|ES162849.1|ES162849
genomic: GATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcgagtttct ... tgatgaacagGAAAGTTCCCAACACTTGTGAGTCACCAAGAGTCATTGGAAGCAAAGGTGA
EST: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG GAAAGTTCCCAACAEST: gi|125269802|gb|EL283887.1|EL283887
genomic: TGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcgagtttct ... tgatgaacagGAAAGTTCCCAACA
EST: AGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAG GAAAGTTCCCAACACTTGTGAGTCACCAAGAGTCATTGGAAGCAAAGGTGAEST: gi|164170431|gb|ES062520.1|ES062520
genomic: AGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcgagtttct ... tgatgaacagGAAAGTTCCCAACACTTGTGAGTCACCAAGAGTCATTGGAAGCAAAGGTGA
EST: CGTCTTCTTGGTCCTGGTCTTAACAAGGCAG GAAAGTTCCCAACACTTGTGAGTCACCAAGAGTCATTGGAAGCAAAGGTGAEST: gi|124938402|gb|EL015033.1|EL015033
genomic: CGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcgagtttct ... tgatgaacagGAAAGTTCCCAACACTTGTGAGTCACCAAGAGTCATTGGAAGCAAAGGTGA
EST: GTCTTAACAAGGCAG GAAAGTTCCCAACACTTGTGAGTCACCAAGAGTCATTGGAAGCAAAGGTGAEST: gi|125065602|gb|EL132773.1|EL132773
genomic: GTCTTAACAAGGCAGgcgagtttct ... tgatgaacagGAAAGTTCCCAACACTTGTGAGTCACCAAGAGTCATTGGAAGCAAAGGTGA
EST: CCTGGTCTTAACAAGGCAG GAAAGTTCCCAACACTTGTGAGTCACCAAGAGTCATTGGAAGCAAAGGTGA
genomic: CCTGGTCTTAACAAGGCAGgcgagtttct ... tgatgaacagGAAAGTTCCCAACACTTGTGAGTCACCAAGAGTCATTGGAAGCAAAGGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGTTAAGAAGCTTGCTAAGTCTTACCATGCTTTCTTGGCTTCTGAGTCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGgcgagtttcttcaataactttgatacttggtatattatatggtcatcatttagtttcgttttcaagctctatgtctgaggtttctacttgtttgattgatgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT