Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCACATCTGTAAAGGTGGAACTAATTCAGAGATTAGTTTCTTCTGGATTGCCTGTTGTCGAGGCTACAAGTTTTGTATCACCAAAGTGGGTTCCCCAGgtaatgctgttatgctggtgtatataaattatatctttcctgaactttcctgtttggtgtattgtataattaagcatataaagcgaccactttgaagaaa...

Basic information

species Arabidopsis thaliana
transcript AT2G26800.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G26800.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G175071_T01 (Zea mays), 5'ss of exon 3
ACCCACATCTGTAAAGGTGGAACTAATTCAGAGATTAGTTTCTTCTGGATTGCCTGTTGTCGAGGCTACAAGTTTTGTATCACCAAAGTGGGTTCCCCAGgtaatgctgttatgctggtgtatataaattatatctttcctgaac---tttcctgtttg-gtgtattgtata-attaagcatataaagcgaccactttgaagaaa
 || ||| |||||||||| || || || |  ||||| |   | |||||||| |||||||| ||||| || ||||||||||| ||||| ||||| || |||||| |  || | | |     | | |  |  | ||      |  ||   | |  | | ||    ||||||| | ||| |   | | | |   |   |||  |    
GCCAACACCTGTAAAGGTTGAGCTTATACGAAGATTGGCCACATCTGGATTACCTGTTGTGGAGGCAACGAGTTTTGTATCTCCAAAATGGGTACCTCAGgta-tagtgctttacaaa-atctctggagaacattcagattagacacctgttttatctgcacctattgtacacattgattttctcaggaccctgatttacaa---

upper sequence: AT2G26800.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv06s0009g02640.t01 (Vitis vinifera), 5'ss of exon 3
ACCCACATCTGTAAAGGTGGAACTAATTCAGAGATTAGTTTCTTCTGGATTGCCTGTTGTCGAGGCTACAAGTTTTGTATCACCAAAGTGGGTTCCCCAGgtaatgctgttatgctggtgtatataaattatatctttcctgaactttcctgtttggtgtattgtataattaagcatataaagcgaccactttgaagaaa----
||| ||| ||||||| ||||||||||| || ||  ||||||||| ||||||||||||||| ||||||||||||||||| || ||||| ||||| || |||||||| | |  ||||   |   | |   || | |    |   |  ||| ||| ||  |  |||   || ||  || | | | |    |   || ||   |    
ACCTACAGCTGTAAAAGTGGAACTAATCCATAGGCTAGTTTCTTGTGGATTGCCTGTTGTTGAGGCTACAAGTTTTGTGTCGCCAAAATGGGTACCTCAGgtaattcag--atgccatttcttttttgttctttaaggcaccagttttactgatta-taaattcagta-ttgtgcgttttatgttgacttcttaaatttacatg