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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGACGAGGGACTGATTCATTTCCAGTGGCTTGATCGAAACCAGAATACAGTAGAAGATgtatcctctgcacttgtttttttgaattttagaaaaggactagagattctcctagtatcaagtctttgctataccagtggattcgtgacccaagacggtc...

Basic information

species Arabidopsis thaliana
transcript AT2G26590.1
intron # 4
splice site 5'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124905680|gb|EH979760.1|EH979760
EST:     ACTGATTCATTTCCAGTGGCTTGATCGAAACCAGAATACAGTAGAACGAT                         GATCAAATTGTTTTCCCAGATGAAGCTCTATTTGAAAAGGTTAAT
genomic: ACTGATTCATTTCCAGTGGCTTGATCGAAACCAGAATACAGTAGAA-GATgtatcctctg ... ctatttatagGATCAAATTGTTTTCCCAGATGAAGCTCTATTTGAAAAGGTTAAT
EST: gi|86062650|gb|DR358407.1|DR358407
EST:     GACTGATTCATTTCCAGTGGCTTGATCGAAACCAGAATACAGTAGAAGAT                         GATCAAATTGTTTTCCCAGATGAAGCTCTATTTGAAAAGGTTAATCAATCC
genomic: GACTGATTCATTTCCAGTGGCTTGATCGAAACCAGAATACAGTAGAAGATgtatcctctg ... ctatttatagGATCAAATTGTTTTCCCAGATGAAGCTCTATTTGAAAAGGTTAATCAATCC
EST: gi|86062651|gb|DR358408.1|DR358408
EST:     GACTGATTCATTTCCAGTGGCTTGATCGAAACCAGAATACAGTAGAAGAT                         GATCAAATTGTTTTCCCAGATGAAGCTCTATTTGAAAAGGTTAATCAATCC
genomic: GACTGATTCATTTCCAGTGGCTTGATCGAAACCAGAATACAGTAGAAGATgtatcctctg ... ctatttatagGATCAAATTGTTTTCCCAGATGAAGCTCTATTTGAAAAGGTTAATCAATCC
EST: gi|125311226|gb|EL325311.1|EL325311
EST:     CTTGATCGAAACCAGAATACAGTAGAAGAT                         AATCAAATTGTTTTCCCAGATGAAGCTCTATTTGAAAAGGTTAATCAATCC
genomic: CTTGATCGAAACCAGAATACAGTAGAAGATgtatcctctg ... ctatttatagGATCAAATTGTTTTCCCAGATGAAGCTCTATTTGAAAAGGTTAATCAATCC
EST: gi|124766997|gb|EH857127.1|EH857127
EST:     GACTGATTCATTTCCAGTGGCTTGATCGAAACCAGAATACAGTAGAAGAT                         GATCAAATTGTTTTCCCAG
genomic: GACTGATTCATTTCCAGTGGCTTGATCGAAACCAGAATACAGTAGAAGATgtatcctctg ... ctatttatagGATCAAATTGTTTTCCCAG
EST: gi|86062649|gb|DR358406.1|DR358406
EST:     GACTGATTCATTTCCAGTGGCTTGATCGAAACCAGAATACAGTAGAAGAT                         GATCAAATTGTTTTCCCAGATGAAGCTCTATTTGAAAAGGTTAATCAATCC
genomic: GACTGATTCATTTCCAGTGGCTTGATCGAAACCAGAATACAGTAGAAGATgtatcctctg ... ctatttatagGATCAAATTGTTTTCCCAGATGAAGCTCTATTTGAAAAGGTTAATCAATCC
EST: gi|124789251|gb|EH878930.1|EH878930
EST:     ACTGATTCATTTTCCAGTGGCTTGATCGAAACCAGAATACAGTAGAAGAT                         GATCAAATTGTTTTCCCAGATGAAGCTCTATTT
genomic: ACTGATTCA-TTTCCAGTGGCTTGATCGAAACCAGAATACAGTAGAAGATgtatcctctg ... ctatttatagGATCAAATTGTTTTCCCAGATGAAGCTCTATTT