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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAGgtatattttctatgtgacacggaaaaatcccttgccttaagctatttactgcctaagaattggtcctgattttttatactattttctggattacag

Basic information

species Arabidopsis thaliana
transcript AT2G25910.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86035177|gb|DR330930.1|DR330930
EST:     CTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG                         ATTGCTTATTCTCHGATTGAAGAACAAGAAGGGCGGAGGAGAC-TCTAGAT
genomic: CTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAGgtatattttc ... tggattacagATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGGAGGAGACCTCTAGAT
EST: gi|86035184|gb|DR330937.1|DR330937
EST:     CTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG                         ATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGGAGGAGACCTCTAGAT
genomic: CTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAGgtatattttc ... tggattacagATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGGAGGAGACCTCTAGAT
EST: gi|86035180|gb|DR330933.1|DR330933
EST:     CTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG                         ATTGCTTATTCTCTGATTGAAGA-CAAGAAGGGCGGAGGAGACCTCTAGAT
genomic: CTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAGgtatattttc ... tggattacagATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGGAGGAGACCTCTAGAT
EST: gi|86035183|gb|DR330936.1|DR330936
EST:     CTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG                         ATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGGAGGAGACCTCTAGAT
genomic: CTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAGgtatattttc ... tggattacagATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGGAGGAGACCTCTAGAT
EST: gi|86035181|gb|DR330934.1|DR330934
EST:     CTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG                         ATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGGAGGAGACCTCTAGAT
genomic: CTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAGgtatattttc ... tggattacagATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGGAGGAGACCTCTAGAT
EST: gi|86035176|gb|DR330929.1|DR330929
EST:     CTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG                         ATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGGAGGAGACCTCTAGAT
genomic: CTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAGgtatattttc ... tggattacagATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGGAGGAGACCTCTAGAT
EST: gi|125089411|gb|EL147790.1|EL147790
EST:     CTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG                         ATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGG
genomic: CTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAGgtatattttc ... tggattacagATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGG
EST: gi|86035179|gb|DR330932.1|DR330932
EST:     CTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG                         ATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGGAGGAGACCTCTAGAT
genomic: CTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAGgtatattttc ... tggattacagATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGGAGGAGACCTCTAGAT
EST: gi|124796397|gb|EH886076.1|EH886076
EST:     AATGTTGTGGACACTCAG                         ATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGGAGGAGACCTCTAGAT
genomic: AATGTTGTGGACACTCAGgtatattttc ... tggattacagATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGGAGGAGACCTCTAGAT
EST: gi|86035186|gb|DR330939.1|DR330939
EST:     CTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG                         ATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGGAGGAGACCTCTAGAT
genomic: CTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAGgtatattttc ... tggattacagATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGGAGGAGACCTCTAGAT
EST: gi|86035185|gb|DR330938.1|DR330938
EST:     CTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG                         ATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGGAGGAGACCTCTAGAT
genomic: CTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAGgtatattttc ... tggattacagATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGGAGGAGACCTCTAGAT
EST: gi|86035174|gb|DR330927.1|DR330927
EST:     CTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG                         ATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGGAG
genomic: CTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAGgtatattttc ... tggattacagATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGGAG
EST: gi|86035182|gb|DR330935.1|DR330935
EST:     CTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG                         ATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGGAGGAGACCTCTAGAT
genomic: CTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAGgtatattttc ... tggattacagATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGGAGGAGACCTCTAGAT