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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAATGTTTATCATGCCACAAAATCTGACGGTTCGGAACTTGCAATAAAAGTGTACAAGACATCTGTTCTGGTTTTTAAgtaagctatttacatgaataatgttgtttatcagttcttctaaaactcttaacttaatcccagttttcaactttgatgatttcag

Basic information

species Arabidopsis thaliana
transcript AT2G24990.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G24990.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G035098_T01 (Zea mays), 5'ss of exon 6
GCTAATGTTTATCATGCCACAAAATCTGACGGTTCGGAACTTGCAATAAAAGTGTACAAGACATCTGTTCTGGTTTTTAAgtaagct---atttacatgaataatgttgtttatcagttcttctaaaactctta--acttaatcccagttttcaacttt-gatgatttcag-----------------------------------------------------------
|| ||||| |||||||| |||||  | || ||   ||| |||||||| ||||| ||||| || |||||||| ||||||||||||| |   | ||  |||  |  |      |||   | ||| |  ||  || |  |  |  |     | || | |||| | || ||  |                                                            
GCAAATGTCTATCATGCAACAAAGACGGATGGCCAGGAGCTTGCAATTAAAGTCTACAAAACCTCTGTTCTTGTTTTTAAgtaagattacaattcaatggttgtttcgaactatggatacttgttgaatcctgatcatgtggttgtgctatttaccttttggtgcttgtataaattatttgatctcaaaacgtgtgcttgttaagaaactgtgtcgttttattattgcag

upper sequence: AT2G24990.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA18G46440.1 (Glycine max), 5'ss of exon 4
GCTAATGTTTATCATGCCACAAAATCTGACGGTTCGGAACTTGCAATAAAAGTGTACAAGACATCTGTTCTGGTTTTTAAgtaagctatttacatgaataatgttgtttatcagt-tcttctaaaactcttaacttaatcccagttttcaacttt----gatgatttcag---------------
|| |||||||||||||| || |||||||| |||   ||||||||||| ||||| ||||| ||||||||| |||| || |||||||     ||||  |    |    | | ||||  ||||||    |||| || |  ||   ||  |  |   ||     |  |||  |                
GCAAATGTTTATCATGCAACTAAATCTGATGGTCAAGAACTTGCAATTAAAGTATACAAAACATCTGTTTTGGTATTCAAgtaag-----tacaacagctgtagcttgtttcagcctcttctgttgctctaaattgtattgaaggctgaagtgtttagaaagaattatataggcagccataaatt

upper sequence: AT2G24990.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA09G39750.1 (Glycine max), 5'ss of exon 4
GCTAATGTTTATCATGCCACAAAATCTGACGGTTCGGAACTTGCAATAAAAGTGTACAAGACATCTGTTCTGGTTTTTAAgtaagctatttacatgaataatgttgtttatcag-ttcttctaaaactcttaacttaatcccagttttcaacttt----gatgatttcag---------------
|| |||||||||||||| || ||||||||   |   ||||||||||| ||||| ||||| |||||||||||||| ||||||||||     ||||  |    |    | | |||| |||||||    || |  | |  ||   ||  |  ||  ||     |  |||  |                
GCAAATGTTTATCATGCAACTAAATCTGATACTCAAGAACTTGCAATTAAAGTATACAAAACATCTGTTCTGGTATTTAAgtaag-----tacaacagctgtagcttgtttcagcttcttctgttgctatagattgtattggaggctgaaatgtttagaaagaattatataggcagtcataaatt

upper sequence: AT2G24990.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv17s0000g01390.t01 (Vitis vinifera), 5'ss of exon 4
GCTAATGTTTATCATGCCACAAAATCTGACGGTTCGGAACTTGCAATAAAAGTGTACAAGACATCTGTTCTGGTTTTTAAgtaagctatttacatgaataatgttgtt-tatcagttcttctaaaac-tcttaacttaatcccagttttcaactttgatgatttcag----------------
|| ||||||||||||||||||||||| || |||   ||||||||||| ||||||||||| || |||||||| || |||||||||| | | | ||    | |  | | | |    |   || ||     |    | | |||   ||    ||    | |  ||  ||                 
GCAAATGTTTATCATGCCACAAAATCCGATGGTCACGAACTTGCAATTAAAGTGTACAAAACTTCTGTTCTAGTATTTAAgtaagttctatgcaccttttaactggctgtgatggaaattatagtgtatacggagtgaatataaga---cagtcataaaaataccaatgcatccgtgtatttt