1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCTGAGGTAGAAAAGAAGCTGAAGTATGCTGAAGATGTTTCTTACGGTGTAATTTTCGGGAGAGAGCTCATTAATTCTCCTGCCAATGTGCTTACTCCTGgtatgaattgttgtcatttatgaaatcaaatattttcgtgtttgtgtggtgttcgctgagttttcctaaactgctttgatttttgtatcgtttcag
species | Arabidopsis thaliana |
transcript | AT2G24200.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AATTTTCGGGAGAGAGCTCATTAATTCTCCTGCCAATGTGCTTACTCCTG CTGTACTAGCTGAGGAAGCAGCAAAGGTGGCTTCTACGTACAGTGATGTCTEST: gi|116410702|gb|EG453294.1|EG453294
genomic: AATTTTCGGGAGAGAGCTCATTAATTCTCCTGCCAATGTGCTTACTCCTGgtatgaattg ... atcgtttcagCTGTACTAGCTGAGGAAGCAGCAAAGGTGGCTTCTACGTACAGTGATGTCT
EST: AATTTTCGGGAGAGAGCTCATTAATTCTCCTGCCAATGTGCTTACTCCTG CTGTACTAGCTGAGGAAGCAGCAAAGGTGEST: gi|116409488|gb|EG452080.1|EG452080
genomic: AATTTTCGGGAGAGAGCTCATTAATTCTCCTGCCAATGTGCTTACTCCTGgtatgaattg ... atcgtttcagCTGTACTAGCTGAGGAAGCAGCAAAGGTG
EST: AATTTTCGGGAGAGAGCTCATTAATTCTCCTGCCAATGTGCTTACTCCTG CTGTACTAGCTGAGGAAGCAGCAAAGGTGGCTTCTACGTACAGTGATGTCTEST: gi|116409481|gb|EG452073.1|EG452073
genomic: AATTTTCGGGAGAGAGCTCATTAATTCTCCTGCCAATGTGCTTACTCCTGgtatgaattg ... atcgtttcagCTGTACTAGCTGAGGAAGCAGCAAAGGTGGCTTCTACGTACAGTGATGTCT
EST: AATTTTCGGGAGAGAGCTCATTAATTCTCCTGCCAATGTGCTTACTCCTG CTGTACTAGCTGAGGAAGCAGCAAAGGTGGCTTCTACGTACAGTGATGTCTEST: gi|116409480|gb|EG452072.1|EG452072
genomic: AATTTTCGGGAGAGAGCTCATTAATTCTCCTGCCAATGTGCTTACTCCTGgtatgaattg ... atcgtttcagCTGTACTAGCTGAGGAAGCAGCAAAGGTGGCTTCTACGTACAGTGATGTCT
EST: AATTTTCGGGAGAGAGCTCATTAATTCTCCTGCCAATGTGCTTACTCCTG CTGTACTAGCTGAGGAAGCAGCAAAGGTGGCTTCTACGTACAGTGATGTCTEST: gi|116409617|gb|EG452209.1|EG452209
genomic: AATTTTCGGGAGAGAGCTCATTAATTCTCCTGCCAATGTGCTTACTCCTGgtatgaattg ... atcgtttcagCTGTACTAGCTGAGGAAGCAGCAAAGGTGGCTTCTACGTACAGTGATGTCT
EST: AATTTTCGGGAGAGAGCTCATTAATTCTCCTGCCAATGTGCTTACTCCTG CTGTACTAGCTGAGGAAGCAGCAAAGGTGGCTTCTACGTACAGTGATGTCTEST: gi|116409487|gb|EG452079.1|EG452079
genomic: AATTTTCGGGAGAGAGCTCATTAATTCTCCTGCCAATGTGCTTACTCCTGgtatgaattg ... atcgtttcagCTGTACTAGCTGAGGAAGCAGCAAAGGTGGCTTCTACGTACAGTGATGTCT
EST: AATTTTCGGGAGAGAGCTCATTAATTCTCCTGCCAATGTGCTTACTCCTG CTGTACTAGCTGAGGAAGCAGCAAAGGTGGCTTCTACGTACAGTGATGTCTEST: gi|116409618|gb|EG452210.1|EG452210
genomic: AATTTTCGGGAGAGAGCTCATTAATTCTCCTGCCAATGTGCTTACTCCTGgtatgaattg ... atcgtttcagCTGTACTAGCTGAGGAAGCAGCAAAGGTGGCTTCTACGTACAGTGATGTCT
EST: AATTTTCGGGAGAGAGCTCATTAATTCTCCTGCCAATGTGCTTACTCCTG CTGTACTAGCTGAGGAAGCAGCAAAGGTGGCTTCTACGTACAGTGATGTCTEST: gi|47830794|gb|CK120478.1|CK120478
genomic: AATTTTCGGGAGAGAGCTCATTAATTCTCCTGCCAATGTGCTTACTCCTGgtatgaattg ... atcgtttcagCTGTACTAGCTGAGGAAGCAGCAAAGGTGGCTTCTACGTACAGTGATGTCT
EST: AATTTTCGGGAGAGAGCTCATTAATTCTCCTGCCAATGTGCTTACTCCTG CTGTACTAGCTGAGGAAGCAGCAAAGGTGGCTTCTACGTACAGTGATGTCT
genomic: AATTTTCGGGAGAGAGCTCATTAATTCTCCTGCCAATGTGCTTACTCCTGgtatgaattg ... atcgtttcagCTGTACTAGCTGAGGAAGCAGCAAAGGTGGCTTCTACGTACAGTGATGTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGAGGTAGAAAAGAAGCTGAAGTATGCTGAAGATGTTTCTTACGGTGTAATTTTCGGGAGAGAGCTCATTAATTCTCCTGCCAATGTGCTTACTCCTGgtatgaattgttgtcatttatgaaatcaaatattttcgtgtttgtgtggtgttcgctgagttttcctaaactgctttgatttttgtatcgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA