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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATATTGATTCCGTGATCCAAACCTACCATTTGATGTCTCAGAGATGGTTCACTCATGCATCTCCTACTCTCTTCAACGCAGGAACTCCAAGGCCTCAAgtaaatacctatcacttgatatttattatatctattaaataaggcgttttactttgatacgtgtctttgctgatctgctattgaaaataattgaaattgcag

Basic information

species Arabidopsis thaliana
transcript AT2G21790.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G21790.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 5'ss of exon 4
TGATATTGATTCCGTGATCCAAACCTACCATTTGATGTCTCAGAGATGGTTCACTCATGCATCTCCTACTCTCTTCAACGCAGGAACTCCAAGGCCTCAAgtaa-atacctatcacttgatatttattatatctattaaataaggcgttttactttgatacgtgtctttgctgatctgctattgaaaataattgaaattgcag
||| ||||| || |  ||| | ||||||||| ||||||||||| | ||||| |||||||| || || || || ||||| || || ||||||||||| ||||||    || | | ||  || |  |  ||    |      | |      || |||  |  | | | ||  |||   |||                        
TGACATTGAGTCTGCTATCAAGACCTACCATCTGATGTCTCAGCGCTGGTTTACTCATGCTTCACCGACCCTTTTCAATGCTGGCACTCCAAGGCCCCAAgtactgcacatttgaccagaaaaatcctagtcttggactctgaaattgcttgctt--actcttttattctctgcaatgcag----------------------

upper sequence: AT2G21790.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os02g56100.1 (Oryza sativa), 5'ss of exon 4
TGATATTGATTCCGTGATCCAAACCTACCATTTGATGTCTCAGAGATGGTTCACTCATGCATCTCCTACTCTCTTCAACGCAGGAACTCCAAGGCCTCAAgtaaa----tacctatcacttgatatttattatatctattaaataaggcgttttactttgatacgtgtctt-tgctgatctgctattgaaaataattgaaattgcag
||||||||| || |  ||| |||| |||||  ||||||||||| | ||||| |||||||| || || || || ||||| || || |||||||||||||||||||     | |||| || |  |     |||     ||||||| | ||  | |||   |  |   ||| || ||| |                              
TGATATTGAATCTGCTATCAAAACGTACCACATGATGTCTCAGCGCTGGTTTACTCATGCTTCGCCAACCCTTTTCAATGCTGGCACTCCAAGGCCTCAAgtaatatgcttcctaccattgaagtccaatttggattattaaaaatggtctcttatgctcctctctgttttatgcag------------------------------

upper sequence: AT2G21790.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S195_46V6.1 (Physcomitrella patens), 5'ss of exon 3
TGATATTGATTCCGTGATCCAAACCTACCATTTGATGTCTCAGAGATGGTTCACTCATGCATCTCCTACTCTCTTCAACGCAGGAACTCCAAGGCCTCAAgtaaatacctatcacttgatatttattatatctattaaataaggcgttttactttgatacgtgtctttgctgatctgctattgaaaa---taattgaaattgcag----------------------------
| |||||||| | ||  |  | || || ||    ||||||||||| ||||||||||| ||||| || ||  | ||||||||||||||||| ||||| || |||   || |  |  |  |  |  | |  ||    |   |      ||||| |||  |  || |   | ||   ||  |  ||       |||| |||  | |                              
TAATATTGATGCAGTCCTAAAGACGTATCACACAATGTCTCAGAGGTGGTTCACTCACGCATCACCGACCTTATTCAACGCAGGAACTCCCAGGCCACAGgtagg-acttg-cgttccaattcaactggatgccatggttgcaattttttattttattttgttttacttcttccctcttggtgggcggtgtaatggaaggtacttatacctggcttggtgttcgggcgtccag