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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTATATTTGAAATTAACTGCTCAAAGGATATCAAAGTTCAGGGAATTATTGGCCCTTGCGCATCTCTCGAAAAGgtatcatataaaactgttaaaggcatctatttttccttcgcttattgtgatcaatatctgatgattatttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G21630.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G21630.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os08g36994.1 (Oryza sativa), 5'ss of exon 7
TGGTATATTTGAAATTAACTGCTCAAAGGATATCAAAGTTCAGGGAATTATTGGCCCTTGCGCATCTCTCGAAAAGgtatcatataaaactgttaaaggcatctat---ttttccttcgcttattgtgatcaatatctg-atgattatttgcag------------------
||||||||||||||||||||||||||||||| ||||| |||| || |||||||| |||||  | || || || |||||||  |||  |  |  | |    || ||    ||||     | | || ||  |  |||| |  |||  | ||| |                    
TGGTATATTTGAAATTAACTGCTCAAAGGATGTCAAAATTCAAGGCATTATTGGACCTTGTACTTCCCTGGAGAAGgtatagtatgtagttaatgacatgatttaaacattttagaatgatgatggtattatatatttttatgggttttttctcatgttattgtttgtacag

upper sequence: AT2G21630.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G09230.1 (Glycine max), 5'ss of exon 5
TGGTATATTTGAAATTAACTGCTCAAAGGATATCAAAGTTCAGGGAATTATTGGCCCTTGCGCATCTCTCGAAAAGgtatcatataaaactgttaaaggcatctatttttccttcgcttattgt-gatcaatatctgatgatt---atttgcag
||| |||||||| || |||||||| |||||  | ||||| || || |||||||||||||| |||||||| ||||||||||    | ||  | | |      |||  |  |  | | |  |   | |||   |||||| |  ||   || || ||
TGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAGTCCAAGGTATTATTGGCCCTTGTGCATCTCTTGAAAAGgtatgtcttgaagatctcacctctttctgctacttatccccccaacatagatgcttatctgtttctttgtatctgtag

upper sequence: AT2G21630.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA03G22740.1 (Glycine max), 5'ss of exon 5
TGGTATATTTGAAATTAACTGCTCAAAGGATATCAAAGTTCAGGGAATTATTGGCCCTTGCGCATCTCTCGAAAAGgtat-catataaaactgttaaaggcatctatttttccttcgcttattgt-gatcaatatctgatgatt---atttgcag
||| |||||||| || |||||||| |||||  | ||||| || || |||||||||||||| |||||||| ||||||||||   ||||| |   |        |||  |  |  | | |  |   | |||   |||||| || ||   ||||||||
TGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAGTCCAAGGTATTATTGGCCCTTGTGCATCTCTTGAAAAGgtatgtctataagaac-tcgcctttttctgctacttatccccacaacatagatgcttatctgctgctttgtatttgcag

upper sequence: AT2G21630.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 5
TGGTATATTTGAAATTAACTGCTCAAAGGATATCAAAGTTCAGGGAATTATTGGCCCTTGCGCATCTCTCGAAAAGgtatcatataaaac-tgttaaaggcatctatttttcctt-----cgcttattgtgatcaatatctgatgattatttgcag
|||||||||||| || ||||||||||||||||||||||||||||| |||||||| || || |||||||| |||||||||| || | ||   |  ||  ||  ||| ||||    |     |  ||    || | | |   || || || | |||||
TGGTATATTTGAGATAAACTGCTCAAAGGATATCAAAGTTCAGGGCATTATTGGTCCCTGTGCATCTCTTGAAAAGgtataatttgaagtgttctagtggtctctcttttctgctggttgcatttcacatgtttagtcattggtgcttttgtgcag