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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACGgtaatgaaccaacatttataagattgtttccgtatgtatacccctttttgtttctatatatatgttttaaatcgtatttttgattggtaattgtatag

Basic information

species Arabidopsis thaliana
transcript AT2G20570.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125196231|gb|EL211185.1|EL211185
EST:     ATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACG                         AGATTTAGAGCACCGCCAGTTGCCGGAATCCCGCATG
genomic: ATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACGgtaatgaacc ... aattgtatagAGATTTAGAGCACCGCCAGTTGCCGGAATCCCGCATG
EST: gi|86088144|gb|DR383903.1|DR383903
EST:     ATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACG                         AGATTTAGAGCACCGCCAGTTGCCGGAATCCCGCATGCTCTGCCGCCGCAT
genomic: ATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACGgtaatgaacc ... aattgtatagAGATTTAGAGCACCGCCAGTTGCCGGAATCCCGCATGCTCTGCCGCCGCAT
EST: gi|116481675|gb|EG524267.1|EG524267
EST:     ATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACG                         AGATTTAGAGCACCGCCAGTTGCCGGAATCCCGCATGCTCTGCCGCCGCAT
genomic: ATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACGgtaatgaacc ... aattgtatagAGATTTAGAGCACCGCCAGTTGCCGGAATCCCGCATGCTCTGCCGCCGCAT
EST: gi|125003338|gb|EL075607.1|EL075607
EST:     ATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACG                         AGATTTAGAGCACCG
genomic: ATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACGgtaatgaacc ... aattgtatagAGATTTAGAGCACCG
EST: gi|124784619|gb|EH874343.1|EH874343
EST:     ATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACG                         AGATTTAGAGCACCG
genomic: ATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACGgtaatgaacc ... aattgtatagAGATTTAGAGCACCG
EST: gi|116481664|gb|EG524256.1|EG524256
EST:     ATGCATAACGGGACGACTCCGTATTTACCGACCGTAGTTACG                         AGATTTAGAGCACCGCCAGTTGCCGGAATCCCGCATGTTCTGCCGCCGCAT
genomic: ATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACGgtaatgaacc ... aattgtatagAGATTTAGAGCACCGCCAGTTGCCGGAATCCCGCATGCTCTGCCGCCGCAT