1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCACCTTATGATTCCATGGTTCGAAAGGCCAATCATCTATGACGTTCGTGCAAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCAGATGgtattccgcttcatttcatcacttctaatactaatgggtataatcaggtcgtgtggttttgtcgtgtgaactacatgataagcttatgttgtgtggtatttaaacattcag
species | Arabidopsis thaliana |
transcript | AT2G20530.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCAGATG GTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGGCTGACCAATTACCAEST: gi|86023978|gb|DR319731.1|DR319731
genomic: CAAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCAGATGgtattccgct ... aaacattcagGTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGGCTGACCAATTACCA
EST: CAAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCAGATG GTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGGCTGACCAATTACCAEST: gi|86023959|gb|DR319712.1|DR319712
genomic: CAAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCAGATGgtattccgct ... aaacattcagGTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGGCTGACCAATTACCA
EST: CAAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCAGATG GTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGNCTGACCAATTAC-AEST: gi|86023969|gb|DR319722.1|DR319722
genomic: CAAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCAGATGgtattccgct ... aaacattcagGTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGGCTGACCAATTACCA
EST: CAAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCAGATG GTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGGCTGACCAATTACCAEST: gi|47828978|gb|CK118662.1|CK118662
genomic: CAAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCAGATGgtattccgct ... aaacattcagGTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGGCTGACCAATTACCA
EST: CAAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCAGATG GTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGGCTGACCAATTACCA
genomic: CAAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCAGATGgtattccgct ... aaacattcagGTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGGCTGACCAATTACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCACCTTATGATTCCATGGTTCGAAAGGCCAATCATCTATGACGTTCGTGCAAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCAGATGgtattccgcttcatttcatcacttctaatactaatgggtataatcaggtcgtgtggttttgtcgtgtgaactacatgataagcttatgttgtgtggtatttaaacattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG