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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGCGCAAAGATACTTTGACAGAAGAGGAGGCCAAGTTCTATGTCGCTGAGACAGTTCTCGCTATCGAGTCCATCCACAGGCACAATTACATCCACAGgttctgtgagagtaaaatcaaacaaaattaattaattgttctcttgcattttgggtgagcttatcttcttcttttttgcttttgtag

Basic information

species Arabidopsis thaliana
transcript AT2G20470.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G20470.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os10g33640.1 (Oryza sativa), 5'ss of exon 4
TTATGCGCAAAGATACTTTGACAGAAGAGGAGGCCAAGTTCTATGTCGCTGAGACAGTTCTCGCTATCGAGTCCATCCACAGGCACAATTACATCCACAGgt-tctgtgagagtaaaatcaaacaaaattaat-taattgttctcttgcattttgggtgagcttatcttcttcttttttgcttttgtag
| ||| | |||||||| ||||| || || ||||||| ||||||||| | ||| |||||||| || || ||  | |||||||||||||| ||||||||||||| | | |    |||   ||| |  |  ||  | | |  | | |   |   ||  | ||| |||| |   |  ||||  |         
TAATGAGGAAAGATACATTGACTGAGGATGAGGCCAGGTTCTATGTTGGTGAAACAGTTCTTGCAATAGAAGCAATCCACAGGCACAACTACATCCACAGgtgtgtatatttgtagcttcatatcagcttcttcttaccgctgttgagatgttctgatgaacttagcacatgattttcag---------

upper sequence: AT2G20470.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G088245_T01 (Zea mays), 5'ss of exon 4
TTATGCGCAAAGATACTTTGACAGAAGAGGAGGCCAAGTTCTATGTCGCTGAGACAGTTCTCGCTATCGAGTCCATCCACAGGCACAATTACATCCACAGgt--tctgtg----agagtaaa--atcaaacaaaattaatta-attgttctcttgcattttgggtgagcttatcttcttcttttttgcttttgtag
| ||| | ||||| ||  |||| ||||| ||||||| |||||| ||||  ||||| ||||| || ||||| || |||||||||||||| |||||||| ||||   | ||     | |||| |  ||  | ||||     | |    ||  | ||  |     |    || |  |      |   |   ||  | ||
TCATGAGGAAAGACACGCTGACGGAAGACGAGGCCAGGTTCTACGTCGGCGAGACGGTTCTTGCGATCGAATCGATCCACAGGCACAACTACATCCATAGgtataccgtaccatacagtacaccatggagcaaacgcggtcatgccgtcgttttatagacgcgtgatgcgtgccagtacgtgcctgaattccgcag

upper sequence: AT2G20470.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EFJ29515 (Selaginella moellendorffii), 5'ss of exon 4
TTATGCGCAAAGATACTTTGACAGAAGAGGAGGCCAAGTTCTATGTCGCTGAGACAGTTCTCGCTATCGAGTCCATCCACAGGCACAATTACATCCACAGgttctgtgagagtaaaatcaaacaaaattaattaatt-gttctcttgcattttgggtgagcttatcttcttcttttttgcttttgtag
||||||| || || ||  | |||||||| || || |  ||||| ||||   || |  || | || ||||||||||| ||||||||||| ||||| |||||||    || ||||  |   | |     | || | |   ||| |  ||  | ||  |||                              
TTATGCGGAAGGACACACTAACAGAAGATGAAGCTAGATTCTACGTCGGGCAGGCCATTTTGGCAATCGAGTCCATTCACAGGCACAACTACATTCACAGgtatgttgcgagtcgaga-acatggcttgaacttaccagtttttctgtgtcttctgtgcag---------------------------

upper sequence: AT2G20470.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EFJ28086 (Selaginella moellendorffii), 5'ss of exon 4
TTATGCGCAAAGATACTTTGACAGAAGAGGAGGCCAAGTTCTATGTCGCTGAGACAGTTCTCGCTATCGAGTCCATCCACAGGCACAATTACATCCACAGgttctgtgagagtaaaatcaaacaaaattaattaatt-gttctcttgcattttgggtgagcttatcttcttcttttttgcttttgtag
||||||| || || ||  | |||||||| || || |  ||||| ||||   || |  || | || ||||||||||| ||||||||||| ||||| |||||||    || ||||  |   | |     | || | |   ||| |  ||  | ||  |||                              
TTATGCGGAAGGACACACTAACAGAAGACGAAGCTAGATTCTACGTCGGGCAGGCCATTTTGGCAATCGAGTCCATTCACAGGCACAACTACATTCACAGgtatgttgcgagtcgaga-acatggcttgaacttaccagtttttctgtgtcttctgtgcag---------------------------