1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAAAGATGCTAGGACAAGTACTTGTCACCAAGCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAGgtttgttatctgttattcatgattggtgttttttcttctattattgtcactgctcttgcacctttgtttattcattgtgtcttcattttgagcag
species | Arabidopsis thaliana |
transcript | AT2G20420.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGTACTTGTCACCAAGCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAG GTTTACTTGTGTGAGAAATTGTCACTCGTCAATGAGATGTACTTTTCCATTEST: gi|116476127|gb|EG518719.1|EG518719
genomic: AAGTACTTGTCACCAAGCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAGgtttgttatc ... ttttgagcagGTTTACTTGTGTGAGAAATTGTCACTCGTCAATGAGATGTACTTTTCCATT
EST: AAGTACTTGTCACCAAGCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAG GTTTACTTGTGTGAGAAATTGTCACTCGTCAATGAGATGTACTTTTCCATTEST: gi|86045986|gb|DR341741.1|DR341741
genomic: AAGTACTTGTCACCAAGCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAGgtttgttatc ... ttttgagcagGTTTACTTGTGTGAGAAATTGTCACTCGTCAATGAGATGTACTTTTCCATT
EST: AAGTACTTGTCACCAAGCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAG GTTTACTTGTGTGAGAAATTGTCACTCGTCAATGAGATGTACTTTTCCATTEST: gi|86045998|gb|DR341753.1|DR341753
genomic: AAGTACTTGTCACCAAGCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAGgtttgttatc ... ttttgagcagGTTTACTTGTGTGAGAAATTGTCACTCGTCAATGAGATGTACTTTTCCATT
EST: AAGTACTTGTCACCAAGCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAG GTTTACTTGTGTGAGAAATTGTCACTCGTCAATGAGATGTACTTTTCCATTEST: gi|86046005|gb|DR341760.1|DR341760
genomic: AAGTACTTGTCACCAAGCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAGgtttgttatc ... ttttgagcagGTTTACTTGTGTGAGAAATTGTCACTCGTCAATGAGATGTACTTTTCCATT
EST: AAGTACTTGTCACCAAGCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAG GTTTACTTGTGTGAGAAATTGTCACTCGTCAATGAGATGTACTTTTEST: gi|86045999|gb|DR341754.1|DR341754
genomic: AAGTACTTGTCACCAAGCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAGgtttgttatc ... ttttgagcagGTTTACTTGTGTGAGAAATTGTCACTCGTCAATGAGATGTACTTTT
EST: AAGTACTTGTCACCAAGCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAG GTTTACTTGTGTGAGAAATTGTCACEST: gi|86045991|gb|DR341746.1|DR341746
genomic: AAGTACTTGTCACCAAGCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAGgtttgttatc ... ttttgagcagGTTTACTTGTGTGAGAAATTGTCAC
EST: AAGTACTTGTCACCAAGCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAG GTTTACTTGTGTGAGAAATTGTCACTCGTCAATGAGATGTACTTTTCCATTEST: gi|86045985|gb|DR341740.1|DR341740
genomic: AAGTACTTGTCACCAAGCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAGgtttgttatc ... ttttgagcagGTTTACTTGTGTGAGAAATTGTCACTCGTCAATGAGATGTACTTTTCCATT
EST: AAGTACTTGTCACCAAGCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAG GTTTACTTGTGTGAGAAATTGTCACTCGTCAATGAGATGTACTTTTCCATTEST: gi|86045989|gb|DR341744.1|DR341744
genomic: AAGTACTTGTCACCAAGCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAGgtttgttatc ... ttttgagcagGTTTACTTGTGTGAGAAATTGTCACTCGTCAATGAGATGTACTTTTCCATT
EST: AAGTACTTGTCACCAAGCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAG GTTTACTTGTGTGAGAAATTGTCACTCGTCAATGAGATGTACTTTTCCATTEST: gi|86045990|gb|DR341745.1|DR341745
genomic: AAGTACTTGTCACCAAGCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAGgtttgttatc ... ttttgagcagGTTTACTTGTGTGAGAAATTGTCACTCGTCAATGAGATGTACTTTTCCATT
EST: AAGTACTTGTCACCAAGCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAG GTTTACTTGTGTGAGAAATTGTCACTCGTCAATGAGATGTACTTTTCCATTEST: gi|116485864|gb|EG528456.1|EG528456
genomic: AAGTACTTGTCACCAAGCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAGgtttgttatc ... ttttgagcagGTTTACTTGTGTGAGAAATTGTCACTCGTCAATGAGATGTACTTTTCCATT
EST: AAGTACTTGTCACCAAGCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAG GTTTACTTGTGTGAGAAATTGTCACTCGTCAATGAGATGTACTTTTCCATT
genomic: AAGTACTTGTCACCAAGCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAGgtttgttatc ... ttttgagcagGTTTACTTGTGTGAGAAATTGTCACTCGTCAATGAGATGTACTTTTCCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGATGCTAGGACAAGTACTTGTCACCAAGCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAGgtttgttatctgttattcatgattggtgttttttcttctattattgtcactgctcttgcacctttgtttattcattgtgtcttcattttgagcag
- - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG