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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAAAATGGGATCACAAGTGCTTGTTCCTTTCCGAGGCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtattcttttatttaacataatgctttcgagggtatgcaacaaaaaaacatctttacaaaaaactatgcattggatcggcaaatttgatgtgtgtttgttgcctgtatattccag

Basic information

species Arabidopsis thaliana
transcript AT2G20360.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G20360.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA13G18950.1 (Glycine max), 5'ss of exon 4
CTAAAATGGGATCACAAGTGCTTGTTCCTTTCCGAGGCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaat----gtattcttttatttaacataatgctttcgagggtatgcaacaaaaaaaca-tctttacaaaaaactatgcattgg-atcggcaaatttgatgtgtgtttgttgcctgt----atattccag----------------
||||||||||||| ||||| || ||||||||||||||||| || ||   ||| || |||||||| |||||||| ||||| ||||||||| |     || | ||||  |     ||  |   ||    |  | |             ||   |   |||  |    | ||  ||  |      | || | | | || |   |||    |  ||||||                
CTAAAATGGGATCTCAAGTCCTAGTTCCTTTCCGAGGCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGgtagttaagataatgtttttatatgtgtagagtcctctcttgcctcctctttctttttggtcagaatggaaaggttaatagtgctatgtgtgtggattatttctatctgctatttgtgctaaccttccagtgattaatatgcccag

upper sequence: AT2G20360.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv07s0005g04440.t01 (Vitis vinifera), 5'ss of exon 4
CTAAAATGGGATCACAAGTGCTTGTTCCTTTCCGAGGCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtattcttttatttaacataatgctttcgagggtatgcaacaaaaaaacatctttacaaaaaactatgcattggatcggcaaatttgatgtgtgtttgttgcctgtatattccag
||||||||||||| |||||| | |||||||||||||| || ||||| |||| ||| ||||| || |||||||| |||||||||||||||   ||     | |||||    | || ||   |   | | ||        || |   |   || |    |      | |       ||| || |    || ||| |||    |  |||
CTAAAATGGGATCCCAAGTGTTGGTTCCTTTCCGAGGTTCTGAGGATTCTCATCGTCATCTTAAATTGATGGGTGATTTAGGACAGgtagaataaatggtgattta-ttcattgattc--aaattttccatttgtgtgac-ttggtgggaacagtagtttggctggtatttccttttaatttagactttttgactgatactatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86048717|gb|DR344472.1|DR344472
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|116387772|gb|EG430364.1|EG430364
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048723|gb|DR344478.1|DR344478
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTANGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTTCGATTAAGGCTGT
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACT-CGATTAAGGCTGT
EST: gi|86048716|gb|DR344471.1|DR344471
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|116377195|gb|EG419787.1|EG419787
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048731|gb|DR344486.1|DR344486
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGAT
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGAT
EST: gi|86048712|gb|DR344467.1|DR344467
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048709|gb|DR344464.1|DR344464
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048725|gb|DR344480.1|DR344480
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048700|gb|DR344455.1|DR344455
EST:     CTCAGAGGACTCTCCTCGASATCTCAAGTTGGATGGGAGATTTAGGACAG                         GTGGTAC-AATGAAATTTGATCCAAGAGATGAAGACTC
genomic: CTCAGAGGACTCTCCTCGACATCTCAAGTTG-ATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTC
EST: gi|125056448|gb|EL126177.1|EL126177
EST:     CTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGA
genomic: CTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGA
EST: gi|86048708|gb|DR344463.1|DR344463
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|116377193|gb|EG419785.1|EG419785
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048720|gb|DR344475.1|DR344475
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048692|gb|DR344447.1|DR344447
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048698|gb|DR344453.1|DR344453
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|125009733|gb|EL082002.1|EL082002
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTT
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTT
EST: gi|86048728|gb|DR344483.1|DR344483
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048733|gb|DR344488.1|DR344488
EST:     CTCAGAGGACTCTCCTCGACATCTCAAGTTGATTGGGAGATTTAGGACAG                         GTGGTACCAATGAAATT
genomic: CTCAGAGGACTCTCCTCGACATCTCAAGTTGAT-GGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATT
EST: gi|86048697|gb|DR344452.1|DR344452
EST:     GCTCAGAGGACTCTCCTCGNNNTCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAGGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048727|gb|DR344482.1|DR344482
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|124738189|gb|EH829591.1|EH829591
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAAT
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAAT
EST: gi|86048729|gb|DR344484.1|DR344484
EST:     CTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAA
genomic: CTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGA-GATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAA
EST: gi|86048714|gb|DR344469.1|DR344469
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048718|gb|DR344473.1|DR344473
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAAGACTCGATTAAGGCTGT
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAA-GACTCGATTAAGGCTGT
EST: gi|86048726|gb|DR344481.1|DR344481
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048710|gb|DR344465.1|DR344465
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048706|gb|DR344461.1|DR344461
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048734|gb|DR344489.1|DR344489
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048691|gb|DR344446.1|DR344446
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048688|gb|DR344443.1|DR344443
EST:     CTCAGAGGASTCTSCTCGASATGCTCAAGTTGATGGGAGATTTAAGACAG                         GTGGTAC-AATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: CTCAGAGGACTCTCCTCGACAT-CTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048737|gb|DR344492.1|DR344492
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|116377192|gb|EG419784.1|EG419784
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|116377191|gb|EG419783.1|EG419783
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048721|gb|DR344476.1|DR344476
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|116377190|gb|EG419782.1|EG419782
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|116377199|gb|EG419791.1|EG419791
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|116377200|gb|EG419792.1|EG419792
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048704|gb|DR344459.1|DR344459
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGG
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGG
EST: gi|86048722|gb|DR344477.1|DR344477
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTAC-AATGAAATTTGATCCAAGAGATGAAGACTCGATT
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATT
EST: gi|86048738|gb|DR344493.1|DR344493
EST:     GSTCAGAGGASTCTCCTCGACATCTCAAGTTGATGGGAGATTTAKGACAM                         GTGGTACCAATGAAATTTGATCCAAGAGATGDAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|116377196|gb|EG419788.1|EG419788
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|116377187|gb|EG419779.1|EG419779
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048693|gb|DR344448.1|DR344448
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGANNG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048732|gb|DR344487.1|DR344487
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048730|gb|DR344485.1|DR344485
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048711|gb|DR344466.1|DR344466
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048690|gb|DR344445.1|DR344445
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048735|gb|DR344490.1|DR344490
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048713|gb|DR344468.1|DR344468
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAANTTTGATCCAAGAGATGAANACTCGATTAAGGCTGGC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
EST: gi|86048696|gb|DR344451.1|DR344451
EST:     GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAG                         GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC
genomic: GCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtatt ... tatattccagGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTAAAATGGGATCACAAGTGCTTGTTCCTTTCCGAGGCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGgtaatgtattcttttatttaacataatgctttcgagggtatgcaacaaaaaaacatctttacaaaaaactatgcattggatcggcaaatttgatgtgtgtttgttgcctgtatattccag

- - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT