Sequence
atgc intronic sequence ATGC exonic sequenceAAACTACCTACTTTGGTCTCGGTAAAGGATGCAGATTTTTCTACTGTGGATGCTGTATTCTGCTGTTTACCTCACGGAACAACTCAGgttcattttcctttcattcttccatttcaatttcttaaagcttttcttagcttaacggaaatgagtgtgtatttcaacag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G19940.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G19940.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G01220.1 (Glycine max), 5'ss of exon 4
AAACTACCTACTTTGGTCTCGGTAAAGGATGCAGATTTTTCTACTGTGGATGCTGTATTCTGCTGTTTACCTCACGGAACAACTCAGgttcatttt-----cctttcattcttccattt---caatttcttaaagcttttcttagcttaacggaaatgagtgtgtat-ttcaacag------------------------------------
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GACTTGCCAGATTTGATTTCAATAAAGGATGCAAACTTTTCTGATGTGGATGCTGTATTCTGTTGTTTGCCTCATGGAACTACTCAGgttctttcttatgtcttttgagttttgtatttacccgagtttgccaagagagtgcttgataaagtatatcaaatatcaatgcttaaaagttaagactattccttagattttcgtcttgtttccag
upper sequence: AT2G19940.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA07G29630.1 (Glycine max), 5'ss of exon 5
AAACTACCTACTTTGGTCTCGGTAAAGGATGCAGATTTTTCTACTGTGGATGCTGTATTCTGCTGTTTACCTCACGGAACAACTCAGgttcattt-----tcctttcattcttccatttc----aatttcttaa---agcttttctt--agcttaacggaaatgagtgtgta----tttcaacag-----------------------------
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GACTTGCCAGATTTGATTGCAATAAAGGATGCAAACTTTTCTGATGTGGATGCTGTATTCTGTTGTTTGCCTCATGGAACTACTCAGgttctttcttatgtcttttgagttttgtatttccctgagtttgccaagagagcactggttaaagtataccaaatatcaatgcttaaaagttacaagactattccttagattttcatcttgtttccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164025701|gb|ES035377.1|ES035377EST: TTTCTACTGTGGATGCTGTATTCTGCTGTTTACCTCACGGAACAACTCA
genomic: TTTCTACTGTGGATGCTGTATTCTGCTGTTTACCTCACGGAACAACTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAACTACCTACTTTGGTCTCGGTAAAGGATGCAGATTTTTCTACTGTGGATGCTGTATTCTGCTGTTTACCTCACGGAACAACTCAGgttcattttcctttcattcttccatttcaatttcttaaagcttttcttagcttaacggaaatgagtgtgtatttcaacag
- - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT