Sequence
atgc intronic sequence ATGC exonic sequenceGTTTCGATTGCTAGAACTTGCAATTGCGTATACGCTTTGATTCAACAGAGGCAACGAGATGTGGAATTTAGAGAATCTGCTAATGATCAGAGACAACGgtgactattttgttttttttatctgaatgttgatttttctatgtgcattgtgaattaatggatgttgttaaactaatttagtagcttcattatgatagtg...
Basic information
species | Arabidopsis thaliana |
transcript | AT2G18876.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G18876.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA17G07040.2 (Glycine max), 5'ss of exon 4
GTTTCGATTGCTAGAACTTGCAATTGCGTATACGCTTTGATTCAACAGAGGCAACGAGATGTGGAATTTAGAGAATCTGCTAATGATCAGAGACAACGgtgactattttgttttttttatctgaatgttgatttttctatgtgcattgtgaattaatggatgttgttaaactaatttagtagcttcattatgatagtg
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GTTTCAATTGCGAGGACTTGCAATTGCATTTACGTCTTGCTGCAGCAGAGACAGCGCGACGTGGAGTTTAGAGAGTCTGCTAATGATCAAAGACAACGgtagttgccaaataagtataatccttcgattaatgttagt-cacgtaatgtg---ttgtgtgtgagttcaatgtgttttact---tttgatgttgtag--
upper sequence: AT2G18876.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA13G00980.1 (Glycine max), 5'ss of exon 4
GTTTCGATTGCTAGAACTTGCAATTGCGTATACGCTTTGATTCAACAGAGGCAACGAGATGTGGAATTTAGAGAATCTGCTAATGATCAGAGACAACGgtgactattttgtttt---ttttatctgaatgttgatttttctatgtgcattgtgaattaatggatgttgttaaactaatttagtagcttcattatgatagtg
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GTTTCAATTGCGAGGACTTGCAATTGCATTTACTTCTTGCTCCAGCAGAGACAGCGCGACGTTGAATTTAGAGAGTCTGCTAATGATCAAAGACAACGgtagttgctaaatataagaccttcgattgatgttagtctcgcaatgtgttatgcgtgtgagttcaatgtgttttact--tttgatgttgtag-----------
upper sequence: AT2G18876.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv11s0052g00890.t01 (Vitis vinifera), 5'ss of exon 4
GTTTCGATTGCTAGAACTTGCAATTGCGTATACGCTTTGATTCAACAGAGGCAACGAGATGTGGAATTTAGAGAATCTGCTAATGATCAGAGACAACGgtgactattttgttttttttatctgaatg--ttgatttttctatgtgcattgtgaattaatggatgttgttaaactaatttagtagcttcattatgatagtg
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GTTTCGATTGCGCGGACCTGTAATTGCATTTACTCTCTGCTGCAGCAGAGGCAGCGTGATGTTGAATTTAGGGAGTCTGCTAATGAGCAGAGACAGCGgtaatgtttttggttgttttcgttggtttgcttgaatgtttgctattttttg-gggttagagattgggataactcaattttagcgaattaacttccactga-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86074414|gb|DR370171.1|DR370171EST: AGGCAACTAGATGTGGAATTTAGAGAATCTGCTAATGATCAGAGACAACG ACTTTTATCCGATATGGCGAGACTCGAAGCAAAAGTTGAAAGGCTTGAGAC
genomic: AGGCAACGAGATGTGGAATTTAGAGAATCTGCTAATGATCAGAGACAACGgtgactattt ... tttacttcagACTTTTATCCGATATGGCGAGACTCGAAGCAAAAGTTGAAAGGCTTGAGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTTCGATTGCTAGAACTTGCAATTGCGTATACGCTTTGATTCAACAGAGGCAACGAGATGTGGAATTTAGAGAATCTGCTAATGATCAGAGACAACGgtgactattttgttttttttatctgaatgttgatttttctatgtgcattgtgaattaatggatgttgttaaactaatttagtagcttcattatgatagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG