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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCTTGCGCCGGATGATTTCAGTTCTTGCAAACTCTTACGATAGAGATGCTAAGCCATTAAACGGAACTCACAAGTCCCATGTCCATTCCCCTAAAGAGgtttcccactctctctctgtctctctttctccctttcactcgttgcatgtgtctgcttattggtctctgtaatactaaacaagtgaaacaaatgggtttcag

Basic information

species Arabidopsis thaliana
transcript AT2G15730.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G15730.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA07G33310.1 (Glycine max), 5'ss of exon 4
CCTCTTGCGCCGGATGATTTCAGTTCTTGCAAACTCTTACGATAGAGATGCTAAGCCATTAAACGGAACTCACAAGTCCCATGTCCATTCCCCTAAAGAGgtttcccactctct-ctctgtctctctttctccctttca--ctcgttgcatgtgtctgcttattggtct-----ctgtaatactaaacaagtgaaacaaatgggtttcag-------------------------------------------------------------
 || |||||||||||| |||| || ||||||||    || |||||  ||||||||| ||||||||| |||||||| || ||||| ||||| || || ||||| ||    | ||| || |||   | | |     ||| |   |   ||    ||  ||   ||| |  |     ||  | |   |  ||||     ||| |  |||   |                                                             
TCTTTTGCGCCGGATGGTTTCTGTACTTGCAAATGAATATGATAGGAATGCTAAGCTATTAAACGGGACTCACAAATCTCATGTTCATTCACCAAAGGAGgtctctatttttcttctttgtgcatgtgtacttgtttgagtttgaatgttcatggttgaacatttgcatgagggcttcattgtgatgcaagatgctcaagttagttgatgtattatcctactagagacagttaaagataactatgttactggattctgactatgctttcag