Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGCAAGGGTTCAAGGGGTGATGTTACCATATTGCCTACCTTGGTTGTCAACAACAGACAGTACCGAGgtttgtcttacatagttaacttaagacttcaatacttgtagtttacctttgttaaataaatgtttccttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G14740.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G14740.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G27000.1 (Glycine max), 5'ss of exon 4
GTTGGCAAGGGTTCAAGGGGTGATGTTACCATATTGCCTACCTTGGTTGTCAACAACAGACAGTACCGAGgtttgtcttacatagttaactta-agacttcaatacttgtagtttacctttgttaaataaatgtttccttgcag
||||| ||||| ||| | |||||||||||||||||||||||  | |||||||| || |||||||| ||||||||||  |   |  ||  || | |||  |  || || |   |  |  | |     ||  || |||  || |||
GTTGGTAAGGGGTCACGAGGTGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactgtgtgcttctctgatagatattgat-ctggatttccaattcttaagcattcattttttgttccag

upper sequence: AT2G14740.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G40340.1 (Glycine max), 5'ss of exon 4
GTTGGCAAGGGTTCAAGGGGTGATGTTACCATATTGCCTACCTTGGTTGTCAACAACAGACAGTACCGAGgtttgtcttacatagttaactta-agacttcaatacttgtagtttacctttgttaaataaatgtttccttgcag
||||| ||||| ||| | |||||||||||||||||||||||  | |||||||| || |||||||| ||||||||||  |  ||  ||  || | ||   |  || || |   |  |  | |     ||  || |||  || |||
GTTGGTAAGGGGTCACGAGGTGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactgtatgcttctctgataggtattgat-ctggatttccaattcttaagcattcattttttgttacag

upper sequence: AT2G14740.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA11G00370.1 (Glycine max), 5'ss of exon 4
GTTGGCAAGGGTTCAAGGGGTGATGTTACCATATTGCCTACCTTGGTTGTCAACAACAGACAGTACCGAGgtttgtcttacatagttaacttaagacttcaatacttgtagtttacctttgttaaataaatgtttccttgcag
 |||| ||||| ||  | |||||||||||||||||||||||  | |||||||| ||  |||| || ||||||||||  |  || | |    | | |  |    |  || ||||  ||  |  |||| | |   || |  |   
ATTGGAAAGGGATCGCGAGGTGATGTTACCATATTGCCTACTCTTGTTGTCAATAATCGACAATATCGAGgtttgtactctat-gctcttgtgataggtagtcatctggagtt--ccaattctaaacagaatctttccag---