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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGCAAGGGTACAAGGGGTGATGTTACCATATTGCCTACCTTAGTTGTCAACAACAGACAGTACCGAGgtttgttccgcagtgttcaacttgagacttcaatatatgtagtttagcttattttataatcgttccattgcag

Basic information

species Arabidopsis thaliana
transcript AT2G14720.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G14720.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA20G27000.1 (Glycine max), 5'ss of exon 4
GTTGGCAAGGGTACAAGGGGTGATGTTACCATATTGCCTACCTTAGTTGTCAACAACAGACAGTACCGAGgtttgttccgcagtgttcaacttgagacttcaatatatgtagtttagcttattttataatcgttccattgcag
||||| |||||  || | |||||||||||||||||||||||  |||||||||| || |||||||| |||||||||| | |     |||      |||  |  || |   |     |   |     ||     ||   || |||
GTTGGTAAGGGGTCACGAGGTGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactgtgtgcttctctgatagatattgatctggatttccaattcttaagcattcattttttgttccag

upper sequence: AT2G14720.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA10G40340.1 (Glycine max), 5'ss of exon 4
GTTGGCAAGGGTACAAGGGGTGATGTTACCATATTGCCTACCTTAGTTGTCAACAACAGACAGTACCGAGgtttgttccgcagtgttcaacttgagacttcaatatatgtagtttagcttattttataatcgttcc--attgcag
||||| |||||  || | |||||||||||||||||||||||  |||||||||| || |||||||| |||||||||| | | |   |||    ||| |  |    || || | ||    || ||    | || ||     || |||
GTTGGTAAGGGGTCACGAGGTGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGgtttgtactgtatgcttc--tctgataggtattgatctggatttccaattcttaagcattcattttttgttacag

upper sequence: AT2G14720.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA11G00370.1 (Glycine max), 5'ss of exon 4
GTTGGCAAGGGTACAAGGGGTGATGTTACCATATTGCCTACCTTAGTTGTCAACAACAGACAGTACCGAGgtttgttccgcagtgttcaacttgagacttcaatatatgtagttt-agcttattttataatcgttccattgcag
 |||| |||||  |  | |||||||||||||||||||||||  | |||||||| ||  |||| || |||||||||| |   | || ||    ||| |  |    || || ||||  |  |      | |||| |||||      
ATTGGAAAGGGATCGCGAGGTGATGTTACCATATTGCCTACTCTTGTTGTCAATAATCGACAATATCGAGgtttgtactcta-tgctct-tgtgataggtagtcatctggagttccaattctaaacagaatctttccag-----