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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAGAGgtaaaccctgtttttcaaaaaatttacgcatgtttacttatgatgtatattgttcttgtcctaccattatgagctgtgaccacttctacttttgtgcttg...

Basic information

species Arabidopsis thaliana
transcript AT2G14120.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G14120.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA15G06380.1 (Glycine max), 5'ss of exon 4
GGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAGAGgtaaac------cctgtttttca-aaaaatttacgcatgtttacttatga-tgtatat-----tgtt-cttgtcctaccattatgagctgtgac---cacttctacttttgtgcttg-------------
|||||| ||||||||||||||||||||||||||||   | || ||||||   ||||||||||||||||| || || || ||||||||||| ||||| ||||||| |      |    | |||| ||   |||     | || |  ||  | |  ||||     |||   |||    |     ||||    | |     | || || || | |  |               
GGATATAATGGACAGAGGTACTGATGCTCGGAATCTGTTACTAGGAAAAGTTATTCCTCTTCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGGAGgtaatcatgcttcacactgttcataagggttttttttttttcaaatacaaataaatataaacatgtaatttgcttgattggcatgaaggttaatatgtatttttatttatttattgtttcatcatattag

upper sequence: AT2G14120.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA13G32940.1 (Glycine max), 5'ss of exon 4
GGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAGAGgtaa---------accctgtttttcaaaaaatttacgcatgtttacttatgatgtatattgttcttgtcctaccattatgagctgtga----ccacttctacttttgtgcttg----------
|||||| |||||||||||||||||||| |||||||   | || ||||||   |||||||| |||||||| || || || ||||||||||| ||||| |||||||         || ||||   | |    ||||    |     | | |  ||  | ||     |||  | |     ||||    | |    | | || || |||  || ||           
GGATATAATGGACAGAGGTACTGATGCCCGGAATCTGTTACTAGGAAAAGTTATTCCTCTCCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGGAGgtaatcacacttcacactgtacataagggtatttttcaaatgcaaataaatataaacatgtactttgctcaattgacatgaaggttaatatgcaatttttaatttattgtttcatcatattag

upper sequence: AT2G14120.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA07G30150.1 (Glycine max), 5'ss of exon 4
GGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAGAGgtaaaccctgtttttcaaaaaatttacgcatgtttacttatgatgtatattgttcttgtcctaccattatgagctgtgaccactt--ctacttttgtgcttg----------------------------------------------------
|||||| ||||| |||||||||||||| |||||||   | || ||||||   ||||| || |||||||| || || || ||||| |||||||||||||||||||    |||| ||| |  |  | |     | || |||   |  |     |      | ||    |||  ||   ||     ||  ||  |||  || | |                                                    
GGATATCATGGATAGAGGTACTGATGCCCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTTGGTGTTGTGAATCGTAGTCAAGAGgtaa-tgatgttattctaccaggtcatcatagcttgcttgcaaattggtcggccgacttgctgtttttaaaagaattggttggttggctggtttgctgatcgtaattgtatgtgtaatgctgaaatttacttgtttgttttcacgccaaattag

upper sequence: AT2G14120.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA04G16340.1 (Glycine max), 5'ss of exon 4
GGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAGAGgtaaaccctgtttttca-aaaaatttacgca-tgtttacttatgatgtatattgttcttgtcctaccattatgagctgtgaccacttctacttttgtgcttg--
|||||| ||||||||||||||||||||||||||||   | || ||||||   ||||| || |||||||| || || || |||||||||||| | || ||||||     | | |   |     ||  | ||| | || |  ||   |     ||   | |||||||   |||   | | | |||||   |  || | | |     
GGATATCATGGACAGAGGTACTGATGCTCGGAATCTGTTACTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTAGGTGTTGTAAATCGTTGCCAGGAGgtagtgattttatactacggtgataaaggcagtattaaactactttaacctttacacatgtccta---ttagatgttat-accacaggtcattgtatacacaca

upper sequence: AT2G14120.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G07160.1 (Glycine max), 5'ss of exon 4
GGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAGAGgtaaaccctgtttttcaaaaaatttacgcatgtttacttatgatgtatattgttcttgtcctaccattatgagctgtgaccactt--ctacttttgtgcttg----------------------------------------------
|||||| ||||| ||||| |||||||| |||||||   | || ||||||   ||||| || |||||||| || || || ||||| |||||||||||||||||||    |||| | | |  | || |     | || ||    |  ||  | | |    | ||    ||   ||   ||     ||  ||   ||  || |||                                              
GGATATCATGGATAGAGGCACTGATGCGCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTCGGTGTTGTGAATCGTAGTCAAGAGgtaa-ttatgttatcctaccagttcataatagcttgctggaaaattagttggctggcttgctgttttttaaagaattggttggttggctggcttgctgattgtatgtgtaatgctgaaatttacttgtttgttttaacgtcaaattag

upper sequence: AT2G14120.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 4
GGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAGAGgtaaaccctgtttttcaaaaaatttacgcatgtttacttatgatgtatattgttcttgtcctaccattatgagctgtgaccacttctacttttgtgcttg---
||| ||||||||||||||||| ||||| || |||    | || ||||||   ||||| ||||||||||| ||| | || ||||| ||||||||||||||||||| |   |  |||      | | |   ||  ||   |||  | || |   || |  |   |    | || |    | | |    ||   ||| | |     
GGACATTATGGACAGAGGTACCGATGCCCGCAATTTATTGCTTGGAAAAGTGATTCCCCTTCGACTTGGTTACATAGGTGTTGTGAATCGTAGTCAAGAGgtaatcttggaattttgtggtagtgaaagataattttctatt-tatacacc-ttttgatatgattggtttggggca-gccaaagggtaaggttgagttccttg