Sequence
atgc intronic sequence ATGC exonic sequenceCCTGGAGAGGAGCCTTGCCCTCTTGATCCTTGGATGGTGGTTCCTGATAGGAGCCAGTATGTTGATCAACAGACCTTAAAGCTACAGGAGAATCCGGAGgtatagatttacattgtaatgttttcgctttttttgcacttgtatatattaaatgcttctgagttttgaag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G07690.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G07690.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G075978_T01 (Zea mays), 5'ss of exon 5
CCTGGAGAGGAGCCTTGCCCTCTTGATCCTTGGATGGTGGTTCCTGATAGGAGCCAGTATGTTGATCAACAGACCTTAAAGCTACAGGAGAATCCGGAGgtatagat---ttacattgt-aatgttttcgctttttttgcacttgtatatattaaatgct---tctgagttttgaag----------------------------------------
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CCTGGAGAGGAGCCATGCCCTCTGGACCCTTGGATTGCCGTTCCAGATAAGAGCAAGTATGTGGATCTCCAGACCCTCAAATTGCAAGAGAATCCTGAGgt-tagatgcttttcatccttgatgcaagttgccgagccaaagtgataagt-ttgagtgttttgttcgtgtcttgttgtaaatacgactgacaatgatctcctttttggcatctacag
upper sequence: AT2G07690.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv11s0149g00130.t01 (Vitis vinifera), 5'ss of exon 4
CCTGGAGAGGAGCCTTGCCCTCTTGATCCTTGGATGGTGGTTCCTGATAGGAGCCAGTATGTTGATCAACAGACCTTAAAGCTACAGGAGAATCCGGAGgtatagatttacattgt------aatgttttcgctttttttgcacttgtatat-attaaatgcttctgagttttgaag
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CCGGGAGAAGAGCCATGCCCTATCGATCCTTGGATAGTGGTTCCTGATAAAAGCAAATATGTTGATCAACAGACCCTGAAATTGCAGGAGAATCCTGAGgtagggacactgatcaatgaatagaaattgacattgagtcaatatttttatttgactaggttattttggaaatgatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116420153|gb|EG462745.1|EG462745EST: GGAGCCAGTATGTTGATCAACAGACCTTAAAGCTACAGGAGAATCCGGAG GATGTTCCTACTGGAGAGCTTCCAAGAAATATGCTTCTCTCAGTTGATCGG
genomic: GGAGCCAGTATGTTGATCAACAGACCTTAAAGCTACAGGAGAATCCGGAGgtatagattt ... agttttgaagGATGTTCCTACTGGAGAGCTTCCAAGAAATATGCTTCTCTCAGTTGATCGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTGGAGAGGAGCCTTGCCCTCTTGATCCTTGGATGGTGGTTCCTGATAGGAGCCAGTATGTTGATCAACAGACCTTAAAGCTACAGGAGAATCCGGAGgtatagatttacattgtaatgttttcgctttttttgcacttgtatatattaaatgcttctgagttttgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA