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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTGGTGAAACTTATTGGCTACTGCTGTGAAGATGATCATAGATTGTTAGTCTATGAATACATGGCAATGGGGAGCCTTGAGAAACATCTTTTCCGAAgtaagtttatttcatattcatcgcatatacgtgactaaaggtggaacgtatggatggtttatacagattagttcttagtgtcattataagtatcttgaagaggaattgataaagcatatgttcccatattataaagaaggagtagtgacgaaatgtgtcgtcttttcgaattcacttgacag

Basic information

species Arabidopsis thaliana
transcript AT2G07180.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G07180.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA05G36500.2 (Glycine max), 5'ss of exon 3
AATTTGGTGAAACTTATTGGCTACTGCTGTGAAGATGATCATAGATTGTTAGTCTATGAATACATGGCAATGGGGAGCCTTGAGAAACATCTTTTCCGAAgtaagtttatttcatattcatcgcatatacgtgactaaaggt----ggaacgtatggatggtttatacagattagttc--ttagtgtcattataagtatcttgaagaggaattgataaagcatatgttcccatattataaagaaggagtagtgacgaaatgtgtcgtcttttcgaattcacttgacag
||| ||||||| || ||||| || |||||||| || || ||  | || || |||||||||||||||||||  |||||| | |||||||||||||| || |||||| ||       | |   |  || ||  | | |     |      |  | |   | | | |||  | |  | |    ||| | |||| |  | | |                                                                                         
AATCTGGTGAAGCTCATTGGATATTGCTGTGAGGACGACCACCGGTTATTGGTCTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAgtaagctttgcatgaaatttgcaaatgtatctaattttgaatttttaaattggaccaaggttatatgtacaggaatcagattattctcataaccaatgtt----------------------------------------------------------------------------------------

upper sequence: AT2G07180.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G03070.1 (Glycine max), 5'ss of exon 3
AATTTGGTGAAACTTATTGGCTACTGCTGTGAAGATGATCATAGATTGTTAGTCTATGAATACATGGCAATGGGGAGCCTTGAGAAACATCTTTTCCGAAgtaagtttatttcatattcatcgcatatacgtgactaaaggtggaacgtatggatggtttatacagattagttcttagtgtcattataagtatcttgaagaggaattgataaagcatatgttcccatattataaagaaggagtagtgacgaaatgtgtcgtcttttcgaattcacttgacag
||| ||||||| || ||||| || | |||||| ||||| ||  | || || || ||||||||||||||||  |||||| | |||||||||||||| || |||||| ||     | ||  |      | | ||  |||||  |  ||  | |  || |   |   || ||| |   ||  |  || |  | |||  |     | |||| |||                                                                       
AATCTGGTGAAGCTCATTGGATATTCCTGTGAGGATGACCACCGGTTATTGGTGTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAgtaagctt----tacatggaatttgcaaatgtatctaaaattttaatttttaaattgg--accaaggtta-tatgtaccgggatca-gattattctc----gtaattaatat----------------------------------------------------------------------

upper sequence: AT2G07180.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv11s0065g00470.t01 (Vitis vinifera), 5'ss of exon 3
AATTTGGTGAAACTTATTGGCTACTGCTGTGAAGATGATCATAGATTGTTAGTCTATGAATACATGGCAATGGGGAGCCTTGAGAAACATCTTTTCCGAAgtaagtttatttcatattcatcgcatatacgtgactaaaggtggaacgtatggatggtttatacagattagttcttagtgtcattataagtatcttgaagaggaattgataaagcatatgttcccatattataaagaaggagtagtgacgaaatgtgtcgtcttttcgaattcacttgacag
||| | ||||| || ||||| | ||||||||||||||| |||||  |||| ||||||||||| ||||||   || ||||| || ||||| || || || |||||||           | || |||| ||     || |  || ||   ||     |||||  |    | |  |  || |   ||   |     |||    |   ||||| | | ||                                                                  
AATCTCGTGAAGCTCATTGGATTCTGCTGTGAAGATGACCATAGGCTGTTGGTCTATGAATATATGGCATGCGGAAGCCTGGAAAAACACCTATTTCGCAgtaagt--------agctaatggcattta-aaagctgagtgttgattataaatgaggttt-catgactca--tgataatcaaatccaacaagcctt----acacattgacacatca------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124861213|gb|EH945650.1|EH945650
EST:     AGCCTTGAGAAACATCTTTTCCGAA                         GAGTTGGATGCACTTTGACATGGACAAAAAGAATGAAGATTGCGCTAGACG
genomic: AGCCTTGAGAAACATCTTTTCCGAAgtaagtttat ... cacttgacagGAGTTGGATGCACTTTGACATGGACAAAAAGAATGAAGATTGCGCTAGACG
EST: gi|125188737|gb|EL203691.1|EL203691
EST:     AGCCTTGAGAAACATCTTTTCCGAA                         GAGTTGGATGCACTTTGACATGGACAAAAAGAAATGAAGATTGCGCTAGAC
genomic: AGCCTTGAGAAACATCTTTTCCGAAgtaagtttat ... cacttgacagGAGTTGGATGCACTTTGACATGGACAAAAAGAA-TGAAGATTGCGCTAGAC
EST: gi|125303113|gb|EL317198.1|EL317198
EST:     AGCCTTGAGAAACATCTTTTCCGAA                         GAGTTGGATGCACTTTGACATGGACAAAAAAGAAATGAAGATTGCGCTAGA
genomic: AGCCTTGAGAAACATCTTTTCCGAAgtaagtttat ... cacttgacagGAGTTGGATGCACTTTGACATGGACAAAAA-GAA-TGAAGATTGCGCTAGA
EST: gi|125066721|gb|EL133489.1|EL133489
EST:     AGTCTATGAATACATGGCAATGGGGAGCCTTGAGAAACATCTTTTCCGAA                         GAGTTGGATGCACTTTGACATGGACAA
genomic: AGTCTATGAATACATGGCAATGGGGAGCCTTGAGAAACATCTTTTCCGAAgtaagtttat ... cacttgacagGAGTTGGATGCACTTTGACATGGACAA
EST: gi|125102240|gb|EL157067.1|EL157067
EST:     TGAATACATGGCAATGGGGAGCCTTGAGAAACATCTTTTCCGAA                         GAGTTGGATGCACTTTGACATGGACAAAAAGAATGAAGATTGCGCTAGACG
genomic: TGAATACATGGCAATGGGGAGCCTTGAGAAACATCTTTTCCGAAgtaagtttat ... cacttgacagGAGTTGGATGCACTTTGACATGGACAAAAAGAATGAAGATTGCGCTAGACG
EST: gi|124794732|gb|EH884411.1|EH884411
EST:     AAACATCTTTTCCGAA                         GAGTTGGATGCACTTTGACATGGACAAAAAGAATGAAGATTGCGCTAGACG
genomic: AAACATCTTTTCCGAAgtaagtttat ... cacttgacagGAGTTGGATGCACTTTGACATGGACAAAAAGAATGAAGATTGCGCTAGACG