1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTCACTCTAGTTGCAGGACTGGGTATAATTCTTTATTCAGTTGTCGGTAATGCCGGTGATTGGACGGAGTTTTATCAGTACTTTCGAGAGAGCAAATTTgtaagcctcatttccctggaaatgttttcgtatctgtcctcatatttgacctaaactaaaatgcag
species | Arabidopsis thaliana |
transcript | AT2G04360.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATGCCGGTGATTGGACGGAGTTTTATCAGTACTTTCGAGAGAGCAAATTT ATTCATGTTACAAGTCTTGATTTCTGTTTACTCTCTGCATTTGCTCCGTTTEST: gi|124987570|gb|EL060020.1|EL060020
genomic: ATGCCGGTGATTGGACGGAGTTTTATCAGTACTTTCGAGAGAGCAAATTTgtaagcctca ... taaaatgcagATTCATGTTACAAGTCTTGATTTCTGTTTACTCTCTGCATTTGCTCCGTTT
EST: TTTATCAGTACTTTCGAGAGAGCAAATTT ATTCATGTTACAAGTCTTGATTTCTGTTTACTCTCTGCATTTCGCTCCGTTEST: gi|125059935|gb|EL128612.1|EL128612
genomic: TTTATCAGTACTTTCGAGAGAGCAAATTTgtaagcctca ... taaaatgcagATTCATGTTACAAGTCTTGATTTCTGTTTACTCTCTGCATTT-GCTCCGTT
EST: ATGCCGGTGATTGGACGGAGTTTTATCAGTACTTTCGAGAGAGCAAATTT ATTCATGTTACAAGTCTTGATTTCTGTTTACTCTCTGCATTTGCTCCG
genomic: ATGCCGGTGATTGGACGGAGTTTTATCAGTACTTTCGAGAGAGCAAATTTgtaagcctca ... taaaatgcagATTCATGTTACAAGTCTTGATTTCTGTTTACTCTCTGCATTTGCTCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCACTCTAGTTGCAGGACTGGGTATAATTCTTTATTCAGTTGTCGGTAATGCCGGTGATTGGACGGAGTTTTATCAGTACTTTCGAGAGAGCAAATTTgtaagcctcatttccctggaaatgttttcgtatctgtcctcatatttgacctaaactaaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA