1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGTgtacgtaactaagattaccttcagtattctttggtagccatttttctcattatataagttatgggtttgtttgttatcgtttgcttagtgctagtctttg...
species | Arabidopsis thaliana |
transcript | AT2G03120.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGT CTTTGGAGGTAGAGTTCACAAAGTCCCAAGTTGTTGCGGGAATCCCTGGAAEST: gi|86050554|gb|DR346309.1|DR346309
genomic: AAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGTgtacgtaact ... tactaaacagCTTTGGAGGTAGAGTTCACAAAGTCCCAAGTTGTTGCGGGAATCCCTGGAA
EST: AAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGT CTTTGGAGGTAGAGTTCACAAAGTCCCAAGTTGTTGCGGGAATCCCTGGAAEST: gi|86050556|gb|DR346311.1|DR346311
genomic: AAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGTgtacgtaact ... tactaaacagCTTTGGAGGTAGAGTTCACAAAGTCCCAAGTTGTTGCGGGAATCCCTGGAA
EST: AAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGT CTTTGGAGGTAGAGTTCACAAAGTCCCAAGTTGTTGCGGGAATCCCTGGAAEST: gi|86050548|gb|DR346303.1|DR346303
genomic: AAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGTgtacgtaact ... tactaaacagCTTTGGAGGTAGAGTTCACAAAGTCCCAAGTTGTTGCGGGAATCCCTGGAA
EST: AAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGT CTTTGGAGGTAGAGTTCACAAAGTCCCAAGTTGTTGCGGGAATCC-TGGAAEST: gi|86050557|gb|DR346312.1|DR346312
genomic: AAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGTgtacgtaact ... tactaaacagCTTTGGAGGTAGAGTTCACAAAGTCCCAAGTTGTTGCGGGAATCCCTGGAA
EST: AAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGT CTTTGGAGGTAGAGTTCACAAAGTCCCAAGTTGTTGCGGGAEST: gi|86050552|gb|DR346307.1|DR346307
genomic: AAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGTgtacgtaact ... tactaaacagCTTTGGAGGTAGAGTTCACAAAGTCCCAAGTTGTTGCGGGA
EST: AAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGT CTTTGGAGGTAGAGTTCACAAEST: gi|124978442|gb|EL051619.1|EL051619
genomic: AAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGTgtacgtaact ... tactaaacagCTTTGGAGGTAGAGTTCACAA
EST: TCTTATCGTCTGGCGTTTTCCTTATTTCAAGT CTTTGGAGGTAGAGTTCACAAAGTCCCAAGTTGTTGCGGGAATCCCTGGAAEST: gi|86050550|gb|DR346305.1|DR346305
genomic: TCTTATCGTCTGGCGTTTTCCTTATTTCAAGTgtacgtaact ... tactaaacagCTTTGGAGGTAGAGTTCACAAAGTCCCAAGTTGTTGCGGGAATCCCTGGAA
EST: AAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGT CTTTGGAGGTAGAGTTCACAAAGTCCCAAGTTGTTGCGGGAATCCCTGGAAEST: gi|125296208|gb|EL310293.1|EL310293
genomic: AAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGTgtacgtaact ... tactaaacagCTTTGGAGGTAGAGTTCACAAAGTCCCAAGTTGTTGCGGGAATCCCTGGAA
EST: AAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGT CTTTGGAGGTAGAGTTCACAAAGTCCCAAGTTGTTGCEST: gi|124804686|gb|EH892339.1|EH892339
genomic: AAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGTgtacgtaact ... tactaaacagCTTTGGAGGTAGAGTTCACAAAGTCCCAAGTTGTTGC
EST: TTGGAATGACAATCTTATTCGTCTGGCGTTTTCCTTATTTCAAGT CTTTGGAGGTAGAGTTCACAAAGTCCCAAGTTGTTGCGGGAATCCCTGGAAEST: gi|86050551|gb|DR346306.1|DR346306
genomic: TTGGAATGACAATCTTA-TCGTCTGGCGTTTTCCTTATTTCAAGTgtacgtaact ... tactaaacagCTTTGGAGGTAGAGTTCACAAAGTCCCAAGTTGTTGCGGGAATCCCTGGAA
EST: AAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGT CTTTGGAGGTAGAGTTCACAAAGTCCCAAGTTGTTGCGGGAATTCCCTGGAEST: gi|86050549|gb|DR346304.1|DR346304
genomic: AAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGTgtacgtaact ... tactaaacagCTTTGGAGGTAGAGTTCACAAAGTCCCAAGTTGTTGCGGGAAT-CCCTGGA
EST: AAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGT CTTTTGGAGGTAGAG
genomic: AAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGTgtacgtaact ... tactaaacagCTTT-GGAGGTAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGTgtacgtaactaagattaccttcagtattctttggtagccatttttctcattatataagttatgggtttgtttgttatcgtttgcttagtgctagtctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttttctc