Sequence
atgc intronic sequence ATGC exonic sequenceGTGATAATAATCGGATTTTCTGCAGACATTGGGTATCTGTTAGGAGATTCAAAGGAACATTGCAGgtaactctcctgctcccctgccaatggcatgttttttatggaatgtatcaaaattaaagtaactgacgacttgatgtgtatcttgaaatgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G02860.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G02860.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA18G15950.1 (Glycine max), 5'ss of exon 4
GTGATAATAATCGGATTTTCTGCAGACATTGGGTATCTGTTAGGAGATTCAAAGGAACATTGCAGgtaactctcctgctcccctgccaatggcat-----gttttttatggaatgtatcaaaattaaagtaactgacgacttgatgtgtatctt---gaaatgcag--------------
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GTGATATTAATCGGATTTTCTGCAGACATTGGATATGTATTAGGTGATACACACGAGCATTGCAGgtttcttttctcatcctttcgttatttccttactcattttatttctgtctttttaaaattcacagatatgatgaccttagttagacattaatgaaattcatgtctgaaattgtag
upper sequence: AT2G02860.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G40980.1 (Glycine max), 5'ss of exon 4
GTGATAATAATCGGATTTTCTGCAGACATTGGGTATCTGTTAGGAGATTCAAAGGAACATTGCAGgtaactctcctgctcccctg---ccaatggcatgttttttatggaatgta---tcaaaattaaagtaactgacgacttgatgtgtatct---tgaaatgcag----------------
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GTGATATTAATCGGATTTTCTGCTGACATTGGATATGTATTAGGTGATACACATGAGCATTGCAGgtttctgttctcatcctctggttcttttcttactcattttatttctttgacttttaaatttcacagatatgatgaccttagtcagacattaatgaaattcatatgtctaaatttatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124704475|gb|EH795877.1|EH795877EST: CTGTTAGGAGATTCAAAGGAACATTGCAG TACTTTCAAAGGCGCACGAACCAGGGCAGCTGTTGTCTTTATCATTGGGTT
genomic: CTGTTAGGAGATTCAAAGGAACATTGCAGgtaactctcc ... tgaaatgcagTACTTTCAAAGGCACACGAACCAGGGCAGCTGTTGTCTTTATCATTGGGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGATAATAATCGGATTTTCTGCAGACATTGGGTATCTGTTAGGAGATTCAAAGGAACATTGCAGgtaactctcctgctcccctgccaatggcatgttttttatggaatgtatcaaaattaaagtaactgacgacttgatgtgtatcttgaaatgcag
- - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA