Sequence
atgc intronic sequence ATGC exonic sequenceAAAGTTCGTGGGATCAGCGGTGGAGAGAAGAAGCGGCTGTCACTTGCGTGTGAATTGATCGCTAGTCCCTCTGTCATATTTGCTGATGAACCTACCACTGgtaaatgcctagtctgtctgattctgaacattgatggattgttttaaaaaagaattagaggatgataaaatattcttgtggtcttcag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G01320.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G01320.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G119345_T01 (Zea mays), 5'ss of exon 4
AAAGTTCGTGGGATCAGCGGTGGAGAGAAGAAGCGGCTGTCACTTGCGTGTGAATTGATCGCTAGTCCCTCTGTCATATTTGCTGATGAACCTACCACTGgtaa-atgcctagtct-gtctga---ttctgaacattgat--ggattgttttaaaaaagaattagag-gatgataaaatattcttgtggtcttcag----
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AAAGTTCGTGGAATAAGTGGGGGTGAGAAGAAGCGCCTCTCACTTGCATGTGAGTTGATTGCTAGCCCTTCAGTCATCTTTGCAGACGAACCAACAACAGgtattaaacttgatttagtcttggccttccctacttgaacaagggttttctttattacttctaaatgtggtcctcatttagacgaaacatttttcgtgta
upper sequence: AT2G01320.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv01s0011g04670.t01 (Vitis vinifera), 5'ss of exon 4
AAAGTTCGTGGGATCAGCGGTGGAGAGAAGAAGCGGCTGTCACTTGCGTGTGAATTGATCGCTAGTCCCTCTGTCATATTTGCTGATGAACCTACCACTGgtaa--atgccta--gtctgtctgattctgaacattgatgga--ttgttt-taaaaaagaattagaggatgataaaatattcttgtggtcttcag-----
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AAAGTTCGTGGAATCAGTGGTGGTGAAAAGAAACGTTTGTCACTTGCATGTGAACTGATTGCAAGCCCATCTGTGATATTTGCAGATGAACCCACAACTGgtaggcatgctttttgtttatttaataggtggccctggtgacccttgcttgtaattcattatttggatacgatctggcttacatacagaagtaatacaatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164178327|gb|ES066750.1|ES066750EST: GTCCCTCTGTCATATTTGCTGATGAACCTACCACTG GGCTTGATGCCTTCCAGGCTGAGAAAGTGATGGAGACATTGCAAAAGCTTG
genomic: GTCCCTCTGTCATATTTGCTGATGAACCTACCACTGgtaaatgcct ... tggtcttcagGGCTTGATGCCTTCCAGGCTGAGAAAGTGATGGAGACATTGCAAAAGCTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAGTTCGTGGGATCAGCGGTGGAGAGAAGAAGCGGCTGTCACTTGCGTGTGAATTGATCGCTAGTCCCTCTGTCATATTTGCTGATGAACCTACCACTGgtaaatgcctagtctgtctgattctgaacattgatggattgttttaaaaaagaattagaggatgataaaatattcttgtggtcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT