1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGgttcgtgtattattgtgtttgtgtagattagtcttttgatgaattggcataaactgctaggttgtttcaatacaatgttgttattagtcttaggttaggt...
species | Arabidopsis thaliana |
transcript | AT2G01250.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAG ATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACEST: gi|164004646|gb|EL970618.1|EL970618
genomic: CCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAAC
EST: CCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAG ATTTTCAATGGTGTTT-CCTTEST: gi|125010629|gb|EL082898.1|EL082898
genomic: CCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTT
EST: AGCTCTTGCGTTTGAGACAG ATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTTEST: gi|124748702|gb|EH838832.1|EH838832
genomic: AGCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTT
EST: TTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAG ATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTTEST: gi|125319309|gb|EL333394.1|EL333394
genomic: TTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTT
EST: CTCTTGCGTTTGAGACAG ATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGACTEST: gi|125049921|gb|EL122190.1|EL122190
genomic: CTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATG-CT
EST: CCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAG ATTTTCAATAGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACEST: gi|164037522|gb|ES122063.1|ES122063
genomic: CCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAAT-GGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAAC
EST: GCTCTTGCGTTTGAGACAG ATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTTEST: gi|164108779|gb|ES025314.1|ES025314
genomic: GCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTT
EST: CGTTTGAGACAG ATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTTEST: gi|124812282|gb|EH897148.1|EH897148
genomic: CGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTT
EST: TTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAG ATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTTEST: gi|124984846|gb|EL057474.1|EL057474
genomic: TTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTT
EST: ATTCTCCAGCTCTTGCGTTTGAGACAG ATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTTEST: gi|164122478|gb|ES111041.1|ES111041
genomic: ATTCTCCAGCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTT
EST: GCTCTTGCGTTTGAGACAG ATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTTEST: gi|124799609|gb|EH889288.1|EH889288
genomic: GCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTT
EST: GACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAG ATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGAEST: gi|164063060|gb|ES143257.1|ES143257
genomic: GACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGA
EST: CCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAG ATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATEST: gi|124745629|gb|EH836441.1|EH836441
genomic: CCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGAT
EST: CTCTTGCGTTTGAGACAG ATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTTEST: gi|125242345|gb|EL256430.1|EL256430
genomic: CTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTT
EST: TTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAG ATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGACTACGATGAACATGCTEST: gi|124983668|gb|EL056385.1|EL056385
genomic: TTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGG-CTACGATGAACATGCT
EST: AAGATTCTCCAGCTCTTGCGTTTGAGACAG ATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTTEST: gi|163985597|gb|EL967501.1|EL967501
genomic: AAGATTCTCCAGCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTT
EST: CCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAG ATTTTCAATGGTGTTT-CCTTEST: gi|125191596|gb|EL206550.1|EL206550
genomic: CCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTT
EST: CTTGCGTTTGAGACAG ATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTTEST: gi|164062187|gb|ES070866.1|ES070866
genomic: CTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTT
EST: GCTCTTGCGTTTGAGACAG ATTTTCAATGGTG-TTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTTEST: gi|125221559|gb|EL235644.1|EL235644
genomic: GCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTT
EST: CTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAG ATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTAACGATGAAACATGCEST: gi|164069432|gb|ES196094.1|ES196094
genomic: CTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTA-CGATGAA-CATGC
EST: CATTGACCCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAG ATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTTEST: gi|125100280|gb|EL155788.1|EL155788
genomic: CATTGA-CCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTT
EST: ACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAG ATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTTEST: gi|164049079|gb|ES080861.1|ES080861
genomic: ACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTT
EST: CCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAG ATTTTCAATGGTGTTTTCCEST: gi|163968127|gb|ES170664.1|ES170664
genomic: CCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCC
EST: GACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAG ATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTTEST: gi|164055456|gb|EL988624.1|EL988624
genomic: GACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTT
EST: CCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAG ATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACEST: gi|125202366|gb|EL217320.1|EL217320
genomic: CCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAAC
EST: CCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAG ATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTTEST: gi|124705769|gb|EH797171.1|EH797171
genomic: CCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTT
EST: CCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAG ATTTTCAATGGTGTTTTCCTTAAAGTCAAEST: gi|164081724|gb|ES106353.1|ES106353
genomic: CCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAA
EST: CCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAG ATTT-CAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATEST: gi|125276746|gb|EL290831.1|EL290831
genomic: CCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGAT
EST: CCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAG ATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGAEST: gi|125232096|gb|EL246181.1|EL246181
genomic: CCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGA
EST: CCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAG ATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTT
genomic: CCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGgttcgtgtat ... tgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGgttcgtgtattattgtgtttgtgtagattagtcttttgatgaattggcataaactgctaggttgtttcaatacaatgttgttattagtcttaggttaggt
- - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatacaa