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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAGGTGTTGGGAAATATCCCGTAGTGGAGCCTCTCTAGCCAGTGCTCCTAAAGCATCAATATCACATGATCAGCCGgtaatatgtcattcttcttcttatcttacctttttttttcttttgcctttgaatctgatgcatatacgtcctttcttgtgttgaag

Basic information

species Arabidopsis thaliana
transcript AT1G80670.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116458585|gb|EG501177.1|EG501177
EST:     GAGCCTCTCTAGCCAGTGCTCCTAAAGCATCAATATCACATGATCAGCCG                         GTTTTATGTTCTGCTTGGAAAGATGATGGAACCACAGTCTTTAGCGGTGGA
genomic: GAGCCTCTCTAGCCAGTGCTCCTAAAGCATCAATATCACATGATCAGCCGgtaatatgtc ... tgtgttgaagGTTTTATGTTCTGCTTGGAAAGATGATGGAACCACAGTCTTTAGCGGTGGA
EST: gi|116458586|gb|EG501178.1|EG501178
EST:     GAGCCTCTCTAGCCAGTGCTCCTAAAGCATCAATATCACATGATCAGCCG                         GTTTTATGTTCTGCTTGGAAAGATGATGGAACCACAGTCTTTAGCGGTGGA
genomic: GAGCCTCTCTAGCCAGTGCTCCTAAAGCATCAATATCACATGATCAGCCGgtaatatgtc ... tgtgttgaagGTTTTATGTTCTGCTTGGAAAGATGATGGAACCACAGTCTTTAGCGGTGGA
EST: gi|163982542|gb|EL991949.1|EL991949
EST:     GAGCCTCTCTAGCCAGTGCTCCTAAAGCATCAATATCACATGATCAGCCG                         GTTTTATGTTC
genomic: GAGCCTCTCTAGCCAGTGCTCCTAAAGCATCAATATCACATGATCAGCCGgtaatatgtc ... tgtgttgaagGTTTTATGTTC
EST: gi|164061699|gb|ES017150.1|ES017150
EST:     GAGCCTCTCTAGCCAGTGCTCCTAAAGCATCAATATCACATGATCAGCCG                         GTTTTANGTTC
genomic: GAGCCTCTCTAGCCAGTGCTCCTAAAGCATCAATATCACATGATCAGCCGgtaatatgtc ... tgtgttgaagGTTTTATGTTC
EST: gi|125309153|gb|EL323238.1|EL323238
EST:     CAATATCACATGATCAGCCG                         GTTTTATGTTCTGCTTGGAAAGATGATGGAACCACAGTCTTTAGCGGTGGA
genomic: CAATATCACATGATCAGCCGgtaatatgtc ... tgtgttgaagGTTTTATGTTCTGCTTGGAAAGATGATGGAACCACAGTCTTTAGCGGTGGA
EST: gi|124724926|gb|EH816328.1|EH816328
EST:     CATCAATATCACATGATCAGCCG                         GTTTTATGTTCTGCTTGGAAAGATGATGGAACCACAGTCTTTAGCGGTGGA
genomic: CATCAATATCACATGATCAGCCGgtaatatgtc ... tgtgttgaagGTTTTATGTTCTGCTTGGAAAGATGATGGAACCACAGTCTTTAGCGGTGGA