1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAGgtgggtcttttttattttgctttcattgtgtgcatcatgatttggtttatttttagtagaccaaaggagatatgatggtttttcattctctacag
species | Arabidopsis thaliana |
transcript | AT1G80230.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAG AGGATGAGCATGATGTTGTCEST: gi|86037651|gb|DR333406.1|DR333406
genomic: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAGgtgggtcttt ... ttctctacagAGGATGAGCATGATGTTGTC
EST: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAG AGGATGAGCATGATGTTGTCTGGTTTTGGCTEST: gi|164109389|gb|ES189813.1|ES189813
genomic: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAGgtgggtcttt ... ttctctacagAGGATGAGCATGATGTTGTCTGGTTTTGGCT
EST: GCCCTGGAGGTGAAGGAG AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCTTTTGEST: gi|86037669|gb|DR333424.1|DR333424
genomic: GCCCTGGAGGTGAAGGAGgtgggtcttt ... ttctctacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCTTTTG
EST: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAG AGGATGAGCATGATGTTGTCTGGTEST: gi|86037675|gb|DR333430.1|DR333430
genomic: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAGgtgggtcttt ... ttctctacagAGGATGAGCATGATGTTGTCTGGT
EST: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAG AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCTTEST: gi|86037647|gb|DR333402.1|DR333402
genomic: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAGgtgggtcttt ... ttctctacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCTT
EST: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAG AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAA-GGCAAGTCTTTTEST: gi|86037656|gb|DR333411.1|DR333411
genomic: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAGgtgggtcttt ... ttctctacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCTTTT
EST: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGA-GGAG AGGATGAGCATGATGTTGTCTGGTTTTEST: gi|86037646|gb|DR333401.1|DR333401
genomic: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAGgtgggtcttt ... ttctctacagAGGATGAGCATGATGTTGTCTGGTTTT
EST: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAG AGGATGAGCATGATGTTGTCTGGEST: gi|86037648|gb|DR333403.1|DR333403
genomic: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAGgtgggtcttt ... ttctctacagAGGATGAGCATGATGTTGTCTGG
EST: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAG AGGATGAGCATGATGTTGTCEST: gi|86037661|gb|DR333416.1|DR333416
genomic: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAGgtgggtcttt ... ttctctacagAGGATGAGCATGATGTTGTC
EST: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAG AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAAGCAAGEST: gi|86037654|gb|DR333409.1|DR333409
genomic: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAGgtgggtcttt ... ttctctacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAG
EST: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAG AGGATGAGCATGATGTTGTCTGGTTTTGEST: gi|86037660|gb|DR333415.1|DR333415
genomic: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAGgtgggtcttt ... ttctctacagAGGATGAGCATGATGTTGTCTGGTTTTG
EST: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGA-GGAG AGGATGAGCATGATGTTGTCTEST: gi|86037664|gb|DR333419.1|DR333419
genomic: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAGgtgggtcttt ... ttctctacagAGGATGAGCATGATGTTGTCT
EST: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAG AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCTTTTTEST: gi|86037670|gb|DR333425.1|DR333425
genomic: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAGgtgggtcttt ... ttctctacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCTTTT-
EST: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAG AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAA-GGCAAGTCTTTTEST: gi|86037672|gb|DR333427.1|DR333427
genomic: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAGgtgggtcttt ... ttctctacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCTTTT
EST: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAG AGGATGAGCATGATGEST: gi|164022632|gb|ES131657.1|ES131657
genomic: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAGgtgggtcttt ... ttctctacagAGGATGAGCATGATG
EST: CCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAG AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCTTTTGEST: gi|86037645|gb|DR333400.1|DR333400
genomic: CCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAGgtgggtcttt ... ttctctacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCTTTTG
EST: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAG AGGATGAGCATGATGTTGTCTGEST: gi|86037676|gb|DR333431.1|DR333431
genomic: CAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAGgtgggtcttt ... ttctctacagAGGATGAGCATGATGTTGTCTG
EST: AAATCCTACTACGACATGAGAATAGTTGGTTTGCCCTGGAGGTGAAGGAG AGGATGAGCATGATG
genomic: AAATCCTACTACGACATGAGAATAGTTGGTT-GCCCTGGAGGTGAAGGAGgtgggtcttt ... ttctctacagAGGATGAGCATGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAGgtgggtcttttttattttgctttcattgtgtgcatcatgatttggtttatttttagtagaccaaaggagatatgatggtttttcattctctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG