1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATTGGTCCGTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTTAAAGTGAAAGTGAGATTGAACCTTCATGGAATCGTCTCAGTTGAATCTGCAACTgtaagtttcgctacatgaactatttaaaggctcattctctctagtaactgattacaaattgatcatctagagtcgtgccttccccttatgaacttgggaatcctttaatttatgttaattgttttctcccccctaattgcag
species | Arabidopsis thaliana |
transcript | AT1G79930.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGAAAGTGAGATTGAACCTTCATGGAATCGTCTCAGTTGAATCTGCAACT CTTTTGGAAGAGGAAGAAGTTGAAGTTCCGGTCACAAAAGAACATTCAGAGEST: gi|86087379|gb|DR383138.1|DR383138
genomic: TGAAAGTGAGATTGAACCTTCATGGAATCGTCTCAGTTGAATCTGCAACTgtaagtttcg ... ctaattgcagCTTTTGGAAGAGGAAGAAGTTGAAGTTCCGGTCACAAAAGAACATTCAGAG
EST: TGAAAGTGAGATTGAACCTTCATGGAATCGTCTCAGTTGAATCTGCAACT CTTTTGGAAGAGGAAGAAGTTGAAGTTCCGGTCACAAAAGAACATTCAGAGEST: gi|47829158|gb|CK118842.1|CK118842
genomic: TGAAAGTGAGATTGAACCTTCATGGAATCGTCTCAGTTGAATCTGCAACTgtaagtttcg ... ctaattgcagCTTTTGGAAGAGGAAGAAGTTGAAGTTCCGGTCACAAAAGAACATTCAGAG
EST: TGAAAGTGAGATTGAACCTTCATGGAATCGTCTCAGTTGAATCTGCAACT CTTTTGGAAGAGGAAGA-GTTGAAGTTCCGEST: gi|86087897|gb|DR383656.1|DR383656
genomic: TGAAAGTGAGATTGAACCTTCATGGAATCGTCTCAGTTGAATCTGCAACTgtaagtttcg ... ctaattgcagCTTTTGGAAGAGGAAGAAGTTGAAGTTCCG
EST: TGAAAGTGAGATTGAACCTTCATGGAATCGTCTCAGTTGAATCTGCAACT CTTTTGGAAGAGGAAGAAGTTGAAGTTCCGGTCACAAAAGAACATTCAGAGEST: gi|86087380|gb|DR383139.1|DR383139
genomic: TGAAAGTGAGATTGAACCTTCATGGAATCGTCTCAGTTGAATCTGCAACTgtaagtttcg ... ctaattgcagCTTTTGGAAGAGGAAGAAGTTGAAGTTCCGGTCACAAAAGAACATTCAGAG
EST: TGAAAGTGAGATTGAACCTTCATGGAATCGTCTCAGTTGAATCTGCAACT CTTTTGGAAGAGGAAGAAGTTGAAGTTCCGGTCACAAAAGAACATTCAGAG
genomic: TGAAAGTGAGATTGAACCTTCATGGAATCGTCTCAGTTGAATCTGCAACTgtaagtttcg ... ctaattgcagCTTTTGGAAGAGGAAGAAGTTGAAGTTCCGGTCACAAAAGAACATTCAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGGTCCGTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTTAAAGTGAAAGTGAGATTGAACCTTCATGGAATCGTCTCAGTTGAATCTGCAACTgtaagtttcgctacatgaactatttaaaggctcattctctctagtaactgattacaaattgatcatctagagtcgtgccttccccttatgaacttgggaatcctttaatttatgttaattgttttctcccccctaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA