1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTTCAAATGGAGTTGTCATTGCAACTGAAAAGAAACTTCCTTCTATATTGGTTGATGAAGCGTCTgtaagtttgatcaactctttatagcaattagttctttttcattctgtgcctgctcgtgttactttcctttcggttgcatagtttcagtaactcctacgaaactaatgtttatctattgtctgtttcag
species | Arabidopsis thaliana |
transcript | AT1G79210.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCATTGCAACTGAAAAGAAACTTCCTTCTATATTGGTTGATGAAGCGTCT GTTCAAAAGATTCAACATTTGACTCCCAACATTGGAACTGTTTACAGEST: gi|86065881|gb|DR361638.1|DR361638
genomic: TCATTGCAACTGAAAAGAAACTTCCTTCTATATTGGTTGATGAAGCGTCTgtaagtttga ... tctgtttcagGTTCAAAAGATTCAACATTTGACTCCCAACATTGGAACTGTTTACAG
EST: TCATTGCAACTGAAAAGAAACTTCCTTCTATATTGGTTGATGAAGCGTCT GTTCAAAAGATTCAACATTTGACTCCCAACATTGGAACTGTTTACAGEST: gi|86065890|gb|DR361647.1|DR361647
genomic: TCATTGCAACTGAAAAGAAACTTCCTTCTATATTGGTTGATGAAGCGTCTgtaagtttga ... tctgtttcagGTTCAAAAGATTCAACATTTGACTCCCAACATTGGAACTGTTTACAG
EST: TCATTGCAACTGAAAAGAAACTTCCTTCTATATTGGTTGATGAAGCGTCT GTTCAAAAGATTCAACATTTGACTCCCAACATTGGAACTGTTTACAGEST: gi|86065889|gb|DR361646.1|DR361646
genomic: TCATTGCAACTGAAAAGAAACTTCCTTCTATATTGGTTGATGAAGCGTCTgtaagtttga ... tctgtttcagGTTCAAAAGATTCAACATTTGACTCCCAACATTGGAACTGTTTACAG
EST: TCATTGCAACTGAAAAGAAACTTCCTTCTATATTGGTTGATGAAGCGTCT GTTCAAAAGATTCAACATTTGACTCCCAACATTGGAACTGTTTACAGEST: gi|86065879|gb|DR361636.1|DR361636
genomic: TCATTGCAACTGAAAAGAAACTTCCTTCTATATTGGTTGATGAAGCGTCTgtaagtttga ... tctgtttcagGTTCAAAAGATTCAACATTTGACTCCCAACATTGGAACTGTTTACAG
EST: TCATTGCAACTGAAAAGAAACTTCCTTCTATATTGGTTGATGAAGCGTCT GTTCAAAAGATTCAACATTTGACTCCCAACATTGGAACTGTTTACAGEST: gi|47831532|gb|CK121216.1|CK121216
genomic: TCATTGCAACTGAAAAGAAACTTCCTTCTATATTGGTTGATGAAGCGTCTgtaagtttga ... tctgtttcagGTTCAAAAGATTCAACATTTGACTCCCAACATTGGAACTGTTTACAG
EST: TCATTGCAACTGAAAAGAAACTTCCTTCTATATTGGTTGATGAAGCGTCT GTTCAAAAGATTCAACATTTGACTCCCAACATTGGAACTGTTTACAG
genomic: TCATTGCAACTGAAAAGAAACTTCCTTCTATATTGGTTGATGAAGCGTCTgtaagtttga ... tctgtttcagGTTCAAAAGATTCAACATTTGACTCCCAACATTGGAACTGTTTACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCAAATGGAGTTGTCATTGCAACTGAAAAGAAACTTCCTTCTATATTGGTTGATGAAGCGTCTgtaagtttgatcaactctttatagcaattagttctttttcattctgtgcctgctcgtgttactttcctttcggttgcatagtttcagtaactcctacgaaactaatgtttatctattgtctgtttcag
- - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC