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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGAAGGATATGTTAGATATCTGCAAGGATCAGAATACGAAGATTGTGAAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttattaatcttctatgtaccttttttcctcatttgatttgctaattattctcttcattctccccctttaattatgttggtaattagctcttcttattttttttgtggtgccag

Basic information

species Arabidopsis thaliana
transcript AT1G79150.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116381025|gb|EG423617.1|EG423617
EST:     AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG                         CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: gi|116393421|gb|EG436013.1|EG436013
EST:     TAAAGATATTATTCCTGG                         CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
genomic: TAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: gi|116393370|gb|EG435962.1|EG435962
EST:     AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG                         CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: gi|116393397|gb|EG435989.1|EG435989
EST:     AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG                         CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: gi|116393384|gb|EG435976.1|EG435976
EST:     AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG                         CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: gi|116393385|gb|EG435977.1|EG435977
EST:     AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG                         CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: gi|116393389|gb|EG435981.1|EG435981
EST:     AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG                         CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: gi|116381024|gb|EG423616.1|EG423616
EST:     AAACTTGCCTTGTTATTTCTGTTGGCCGTATTTAAAGATATTATTCCTGG                         CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: gi|116393383|gb|EG435975.1|EG435975
EST:     AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG                         CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: gi|116393380|gb|EG435972.1|EG435972
EST:     AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG                         CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: gi|116393394|gb|EG435986.1|EG435986
EST:     AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG                         CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: gi|116393411|gb|EG436003.1|EG436003
EST:     AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG                         CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: gi|116393373|gb|EG435965.1|EG435965
EST:     AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG                         CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: gi|116393396|gb|EG435988.1|EG435988
EST:     AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG                         CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: gi|116381026|gb|EG423618.1|EG423618
EST:     AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG                         CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: gi|116393392|gb|EG435984.1|EG435984
EST:     AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG                         CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: gi|116393391|gb|EG435983.1|EG435983
EST:     AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG                         CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: gi|116393388|gb|EG435980.1|EG435980
EST:     AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG                         CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: gi|116393379|gb|EG435971.1|EG435971
EST:     AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG                         CTATCGGATTAGACTTCCTACAGAAAAGGA
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGA
EST: gi|116393410|gb|EG436002.1|EG436002
EST:     AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG                         CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA