1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAAAATGTATACCTATAACTAGAGGTGGTGGAATCTACCAAGAAAACATGAATGAAGCTCTCCAGCGATTAAAAGATGGATCTTGGgtatgttatcttgcacctttaaactaattgtacttagatcttttcagacctctgacctttggatttaaccatgactagtag
species | Arabidopsis thaliana |
transcript | AT1G78690.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACCAAGAAAACATGAATGAAGCTCTCCAGCGATTAAAAGATGGATCTTGG CTGCATACCTTCCCAGAGGGAAAGGTEST: gi|124727324|gb|EH818726.1|EH818726
genomic: ACCAAGAAAACATGAATGAAGCTCTCCAGCGATTAAAAGATGGATCTTGGgtatgttatc ... tgactagtagCTGCATACCTTCCCAGAGGGAAAGGT
EST: AGCTCTCCAGCGATTAAAAGATGGATCTTGG CTGCATACCTTCCCAGGGGGAAAGGTGTTTCAAGATGATGTTCCTATAAGA
genomic: AGCTCTCCAGCGATTAAAAGATGGATCTTGGgtatgttatc ... tgactagtagCTGCATACCTTCCCAGAGGGAAAGGTGTTTCAAGATGATGTTCCTATAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAATGTATACCTATAACTAGAGGTGGTGGAATCTACCAAGAAAACATGAATGAAGCTCTCCAGCGATTAAAAGATGGATCTTGGgtatgttatcttgcacctttaaactaattgtacttagatcttttcagacctctgacctttggatttaaccatgactagtag
- - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA